Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_A02
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039713-10|AAB96721.1| 691|Caenorhabditis elegans Hypothetical... 34 0.12
Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical p... 33 0.28
AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. 33 0.28
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 31 0.85
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical pr... 30 2.6
AL117204-1|CAB55141.1| 328|Caenorhabditis elegans Hypothetical ... 30 2.6
U56964-6|AAB54035.1| 848|Caenorhabditis elegans Hypothetical pr... 29 3.4
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 29 6.0
U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate recep... 28 7.9
U39851-1|AAF99869.2| 281|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic gl... 28 7.9
>AF039713-10|AAB96721.1| 691|Caenorhabditis elegans Hypothetical
protein F57B10.4 protein.
Length = 691
Score = 34.3 bits (75), Expect = 0.12
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Frame = +3
Query: 381 KKVRRKVARQLSD-KSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDI 557
KK+ +A+ S ID DF + + N + + ++ + IE+ ++ + +
Sbjct: 74 KKLHSFLAQSTDQVNSTIDKMDFFCS-KGNHSLPMEMSVLSITLPYEACIEKSAKKHETM 132
Query: 558 FKSIDRLASATSTLRNRKPDVVQCSISTGELSF--DDTIDQIDEE-KIDQCIEEAFEELS 728
SID ++SA L N K DV + STG+L F + I ++ EE +++ +E +LS
Sbjct: 133 VFSIDEVSSAVQHLENEKVDVEKRQSSTGKLIFQTEKEIMKLKEEIQVNTNLESNIIQLS 192
>Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical
protein T09A5.10 protein.
Length = 821
Score = 33.1 bits (72), Expect = 0.28
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = +3
Query: 345 LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNN-EANDQQFFFVNGQIISAV 521
LK T D+ +L+K+ R R L+D + + L A Q + Q+
Sbjct: 324 LKTVTEDNGKLMKQARE--LRDLNDYEFARFRQQEQELTETLRATQDQMADLQEQLTGVE 381
Query: 522 SIEEICR-EIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGELS-FDDTIDQIDEEKID 695
I + E + + S++ L+ A+ LRN++ ++ + EL+ F++T+D++ +EK++
Sbjct: 382 KIRASLKSENESLSASVEELSVAS--LRNKQDADNSKTMLSEELARFEETVDKLRQEKLE 439
>AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein.
Length = 821
Score = 33.1 bits (72), Expect = 0.28
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = +3
Query: 345 LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNN-EANDQQFFFVNGQIISAV 521
LK T D+ +L+K+ R R L+D + + L A Q + Q+
Sbjct: 324 LKTVTEDNGKLMKQARE--LRDLNDYEFARFRQQEQELTETLRATQDQMADLQEQLTGVE 381
Query: 522 SIEEICR-EIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGELS-FDDTIDQIDEEKID 695
I + E + + S++ L+ A+ LRN++ ++ + EL+ F++T+D++ +EK++
Sbjct: 382 KIRASLKSENESLSASVEELSVAS--LRNKQDADNSKTMLSEELARFEETVDKLRQEKLE 439
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 31.5 bits (68), Expect = 0.85
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +3
Query: 561 KSIDRLASATSTLRN-RKPDVVQCSISTGELSFDDTIDQID--EEKIDQCIEEAFEELSG 731
K +DR+ +T T+ N + ++ + + + +TID D EE +++ IEE F+E+
Sbjct: 166 KVMDRMRGSTMTMDNGMRKELEEALVDELAKNLGETIDNTDITEEDLEKLIEEGFDEVRK 225
Query: 732 SSQVCARMKTAR 767
Q T +
Sbjct: 226 IDQETTTTTTTK 237
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Frame = +3
Query: 393 RKVARQLSDKSIIDYNDFIRNLQNNEANDQQFF--FVNGQIISAVSIEEICREIDDIFKS 566
R V ++L + + + + + EA++ +F ++ + IEE+ E+D K
Sbjct: 66 RDVGQRLREAKEVLEKELMNKKKTEEASNNRFQRDVEMSRMEAQNKIEEMSVEVDAAHKK 125
Query: 567 IDRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQID--EEKIDQCIEEAFEE 722
++ + S LR D +Q I T + + ++ D + E+++D+ EEA EE
Sbjct: 126 VNEVLSEVEQLRATNFD-LQMHIETAKRTMEELADCNEELEKRVDE-YEEAAEE 177
>Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical
protein F49E11.7 protein.
Length = 402
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 405 RQLSDKSIIDYNDFIRN--LQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRL 578
+ DK + D N+F++ N N +Q + +++ + E +DD I
Sbjct: 18 KMTDDKKMFDINEFLKRHLFVKNWVNYRQQSYTKYELMQLIESVEAALSVDDTLAKISPP 77
Query: 579 ASATSTLRNRKPDVVQ 626
+ + + PD+V+
Sbjct: 78 VTIVGDIHGQYPDLVR 93
>AL117204-1|CAB55141.1| 328|Caenorhabditis elegans Hypothetical
protein Y116A8C.1 protein.
Length = 328
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 489 FFVNGQIISAVSIEEICREIDDIFKSIDR-LASATSTLRNRKPDVVQCSISTGELSFDDT 665
F V I + +I I R +D ++ R + T+ + + + + + E+ DD
Sbjct: 78 FSVQKIIGAGGNIVGIKRTQEDCSETFSRPMFGQTTVTESFTSEKIVFNYTISEIENDDL 137
Query: 666 ID-QIDEEKIDQCIEEAFEELSGSSQVCARMKT 761
I+ + D + QC EE+F + G VC ++T
Sbjct: 138 IEWKFDFKYFVQCDEESFASIRGDIAVCISIRT 170
>U56964-6|AAB54035.1| 848|Caenorhabditis elegans Hypothetical
protein F52E4.7 protein.
Length = 848
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 540 REIDDIFKS-IDRLASATSTLRNRKP-DVVQCSISTGELSFDDTIDQIDEEKIDQCIEEA 713
R D+ F++ I+++ A S+ + K + S+ + SF T +ID E + Q IE
Sbjct: 419 RLFDNFFETLINKVPKANSSEKKSKANESANISLRSDNQSFLSTSSEIDTEVLPQLIETV 478
Query: 714 FEELS 728
ELS
Sbjct: 479 LAELS 483
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 28.7 bits (61), Expect = 6.0
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 63 SSFSXCHLSPVVLACFSXPSTHXPLKPSSVTGASSRR*RVNVSMGXKLLALETI-LLRNX 239
S+ + C L+ +L+ P + + S TG S+ V VS A+ ++ L+++
Sbjct: 3255 SNATKCELANCLLSLIQMPESVSYTETLS-TGGKSKAVAV-VSSKRFWTAISSLSLIKDK 3312
Query: 240 QWMXLEXAWKPVDLDEXRTEEDNEPAM 320
W+ L WK V + EED EP +
Sbjct: 3313 SWLELSERWKTV-----QDEEDQEPVL 3334
>U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 8 protein.
Length = 489
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 306 NEPAMTTMLSALDLKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN 476
N+ + LS + L K + S K+R V R + K I DY ++ + NE N
Sbjct: 323 NDGILPVYLS-IPLVKNSIYSPYFSTKIREMVERGFTQKWIADYRSYVAMQKINECN 378
>U39851-1|AAF99869.2| 281|Caenorhabditis elegans Hypothetical
protein C23G10.5 protein.
Length = 281
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 558 FKSIDRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQIDEE 686
F S + A+ + + +KP + CSI T +D D++DE+
Sbjct: 70 FDSEEEYATFVNWIEAKKPSITDCSIETFNDDLED-FDRLDED 111
>AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic
glutamate receptor GLR-8 protein.
Length = 406
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 306 NEPAMTTMLSALDLKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN 476
N+ + LS + L K + S K+R V R + K I DY ++ + NE N
Sbjct: 315 NDGILPVYLS-IPLVKNSIYSPYFSTKIREMVERGFTQKWIADYRSYVAMQKINECN 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,033
Number of Sequences: 27780
Number of extensions: 255975
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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