Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_A01
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 131 6e-31
06_03_0811 + 24830496-24831194 126 2e-29
02_01_0691 - 5167260-5167937 120 1e-27
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 107 1e-23
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 44 2e-04
01_06_0928 + 33085403-33089224 32 0.51
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 31 0.90
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 31 0.90
06_01_0671 - 4899611-4899829,4900870-4901448 30 2.7
11_03_0128 - 10437407-10438049,10438097-10438272 29 3.6
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068... 29 3.6
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 3.6
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545... 29 3.6
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 3.6
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 131 bits (317), Expect = 6e-31
Identities = 69/148 (46%), Positives = 94/148 (63%), Gaps = 4/148 (2%)
Frame = +1
Query: 103 MAPIKVGDQLPAADL--FE-DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYV 273
MAP+ VGD LP L F+ + +V++ L AGKKVVLF VPGAFTP CS H+PG++
Sbjct: 1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFI 60
Query: 274 QNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPP 453
A++LK+ GV +I+ VSVNDP+VM AW + V+ LAD G + KAL L +L
Sbjct: 61 NQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSE 120
Query: 454 LG-GFRSKRFSMVIVDSKVQDLNVEPDG 534
G G RS+RF+++ + KV N+E G
Sbjct: 121 KGLGIRSRRFALLADNLKVTVANIEEGG 148
>06_03_0811 + 24830496-24831194
Length = 232
Score = 126 bits (304), Expect = 2e-29
Identities = 70/162 (43%), Positives = 102/162 (62%), Gaps = 7/162 (4%)
Frame = +1
Query: 106 APIKVGDQLPAADL-FEDSPANK---VNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYV 273
A I VGD+LP A L + DSP + V + +LTAGKKVVLFAVPGAFTP C++ H+PG+V
Sbjct: 69 ATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFV 128
Query: 274 QNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNL-- 447
A +L++ GV + CVSVND +VM AW +V +L+D +G +A+ + +L
Sbjct: 129 AKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSD 188
Query: 448 PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIK 570
P G G RS+R++++ D V+ LN+E G + S + +K
Sbjct: 189 KPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLK 230
>02_01_0691 - 5167260-5167937
Length = 225
Score = 120 bits (289), Expect = 1e-27
Identities = 70/164 (42%), Positives = 99/164 (60%), Gaps = 8/164 (4%)
Frame = +1
Query: 103 MAPIKVGDQLPAADLFEDSPAN----KVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGY 270
+A I VGD+LP A L PA+ V + ELTAG+K VLFAVPGAFTP CS+ HLPG+
Sbjct: 60 VATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGF 119
Query: 271 VQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT-KGKVRMLADPSGNFIKALDLGTNL 447
++ A +L + GV I CVSVND +VM AW V +L+D + +AL + +L
Sbjct: 120 IEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDL 179
Query: 448 --PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIK 570
P+G G RS+R++++ D V+ LN+E G + S + +K
Sbjct: 180 SDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLK 223
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 107 bits (256), Expect = 1e-23
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +1
Query: 196 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 375
GKKVV+F +PGA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W +
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQA 129
Query: 376 KGKVRMLADPSGNFIKALDLGTNL-PPLGGFRSKRFSMVIVDSKVQDLNVE 525
K + D G+F K+LDL +L L G RS R+S + D K++ NVE
Sbjct: 130 KDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVE 180
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Frame = +1
Query: 97 LSMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSK--THLPGY 270
++M + +GD +P +L DS K+ I + V+LF+ PG FTP C+ + GY
Sbjct: 34 VAMPGLTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGY 91
Query: 271 VQNADKLKSDGVAEIVC--VSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDL 435
+ DK + + I C V + ++ + + ++ADPS IK L++
Sbjct: 92 AKEFDK-RGVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMADPSREAIKQLNM 147
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 32.3 bits (70), Expect = 0.51
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = -2
Query: 554 REQDRPVPSGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRALMKLPLGSASIRTFPL 375
+E+D + T +W + + K SG LVP S L +L L S SI L
Sbjct: 900 KERDEALVKEDTIEAWLCCHKERMRFIYSAK--SGLPLVPPS-GLCELYLSSCSITDGAL 956
Query: 374 VLC*APQAAITYGSLTDTHTISATPSD 294
LC ++ SLT+ T++ PS+
Sbjct: 957 ALCIGGLTSLRELSLTNIMTLTTLPSE 983
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 31.5 bits (68), Expect = 0.90
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -3
Query: 559 RRENKTGQCHRAPHSDLGPCCQR*PSRTFWSGNLRAAADWCPGPEP 422
RRE +T H PHSDL P R P RT + + R P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 31.5 bits (68), Expect = 0.90
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Frame = +1
Query: 151 EDSPANKVNICELTAG------KKVVLFAVP---GAFTPGCSKTHLPGYVQNADKLKSDG 303
E P + +CELT +K + F P GAF K P Y + D L G
Sbjct: 145 EGFPYARPPVCELTGDIRISPKEKTMFFVNPSSAGAFDGNGEKKIRP-YARKDDFLLP-G 202
Query: 304 VAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNF 417
V E++ SV+ P + A HN V +A + NF
Sbjct: 203 VVEVIIKSVSSPAIAPACTRTHNVPAVVFSVAGYTDNF 240
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +1
Query: 100 SMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQN 279
S + G P L D V++ + G+ VV++ P TPGC+K + +
Sbjct: 114 SSVQVSKGSAAPNFTL-RDQDGRAVSLSKFK-GRPVVVYFYPADETPGCTK-QACAFRDS 170
Query: 280 ADKLKSDGVAEIVCVSVND 336
+K K G AE++ +S +D
Sbjct: 171 YEKFKKAG-AEVIGISGDD 188
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 398 PIPAATSSRLWTWAPICRRSEVSAPKGSRWSSLTA 502
P P A+S L +W C RS +S+P S W TA
Sbjct: 233 PSPTASSESLGSWGSGC-RSHLSSPTCSSWWRTTA 266
>09_06_0228 +
21706118-21706252,21706327-21706406,21706742-21706866,
21706960-21707084,21707162-21707380,21707458-21707580,
21707661-21707761,21707847-21707899,21707972-21708174
Length = 387
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 540 ASAIGLHIQILDLAVNDDHREPFGAETSERRQIGAQVQSLDEVAAGIG*HTH 385
A +G + I+ AV D+ PFG ++S R +G SL G+ TH
Sbjct: 113 AGNLGNLLLIVVPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTH 164
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 451 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 567
PL G S F+ +I S +Q +V+ DGT SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>08_01_0627 +
5451140-5451839,5452635-5452662,5452730-5452786,
5453205-5453874
Length = 484
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 283 LRSVRIPASVF*NIPG*RRPAPQIIQPSFPPSTHKYSPY*RENLRINQQQAADPRP 116
LR + A++ P +P PQ+ PSFP +T S R R + DP+P
Sbjct: 13 LRDAQSAAALSNPNPPEPQPQPQLATPSFPTTTDTASRRRRRRRRRGRGNRHDPQP 68
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 217 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNT 375
A+ G P C H+ + K +S V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,399,053
Number of Sequences: 37544
Number of extensions: 510640
Number of successful extensions: 1258
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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