Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P24
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    26   6.5  
SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.6  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   8.6  

>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 456 MRVKKINPRLHSAFISPFRSCLEQIWSYKNLVIEVEELRTIQ 581
           +RV ++ P      I    S  E  W YKN+V ++EE R I+
Sbjct: 125 LRVLRLKPSRKYCTIGRLSS--EVGWKYKNIVSKLEERRKIK 164


>SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 736 CLDWKISYFCITISKSIKS 792
           C  W I+Y  I  +KSIKS
Sbjct: 74  CTAWSIAYLMINATKSIKS 92


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 318 NVEKSLSLSRTKDVKEVISFLDRVVLEKQFVPNNFHNLL 434
           N+E  ++ S+ KD KE +  L  V+ + +   N+F NL+
Sbjct: 290 NLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLV 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,856,200
Number of Sequences: 5004
Number of extensions: 85760
Number of successful extensions: 227
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)