Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P24
(917 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0153 - 26315923-26316024,26316173-26316267,26316737-263167... 60 3e-09
11_04_0328 + 16437947-16438091,16439953-16440062,16440446-164405... 57 2e-08
04_04_0688 - 27288308-27288366,27288475-27288595,27288888-272889... 54 2e-07
03_02_0840 + 11664382-11664516,11664629-11664737,11665579-116656... 53 3e-07
12_01_0170 + 1265642-1265776,1265872-1265980,1266116-1266228,126... 50 2e-06
11_01_0168 + 1362890-1362961,1363059-1363167,1363302-1363414,136... 50 2e-06
08_02_0324 - 15766862-15766871,15767041-15767741 32 0.56
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 30 3.0
02_04_0491 + 23417790-23417859,23418550-23418773,23418951-234189... 29 5.2
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566... 28 9.0
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 28 9.0
01_06_0539 + 30077249-30078739 28 9.0
>02_05_0153 -
26315923-26316024,26316173-26316267,26316737-26316784,
26316925-26317045,26317682-26317736,26317820-26317935,
26318479-26318547,26318909-26319018,26319985-26320069
Length = 266
Score = 59.7 bits (138), Expect = 3e-09
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +3
Query: 576 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFRXXXXXXXXXX 755
+Q+DS+N +H+E L LW P L IS+QW+ +G+QG DP TDFR
Sbjct: 78 VQYDSSNSDHQEALKDLWRASFPGAELRGLISEQWKEMGWQGKDPSTDFRGGGFISLENL 137
Query: 756 XXXHHNIQE--HQVMY*ATHYTPTYGYTFAIVGIN 854
N + +++ + Y FA+ G+N
Sbjct: 138 VYFSKNFPKSFQELLRKQNGDRAIWEYPFAVAGVN 172
>11_04_0328 +
16437947-16438091,16439953-16440062,16440446-16440514,
16440840-16440955,16441049-16441103,16441206-16441326,
16441541-16441635,16441728-16441826
Length = 269
Score = 57.2 bits (132), Expect = 2e-08
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +3
Query: 576 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFR 725
+ FD + +H+E L LW PD+ L+ IS+QW+ +G+QG DP TDFR
Sbjct: 98 VYFDPSRRDHQEALKALWHATYPDQELQGLISEQWKDMGWQGRDPSTDFR 147
>04_04_0688 -
27288308-27288366,27288475-27288595,27288888-27288942,
27289041-27289156,27289548-27289616,27289975-27290084,
27290222-27290306
Length = 204
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +3
Query: 576 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFR 725
+ +D +N EH+E L LW + P L +S QW+ +G+QG DP TDFR
Sbjct: 78 VPYDGSNGEHQEALKTLWHVSFPGTELLGLVSDQWKEMGWQGKDPSTDFR 127
>03_02_0840 +
11664382-11664516,11664629-11664737,11665579-11665676,
11665757-11665825,11665921-11666036,11666113-11666167,
11666250-11666370,11666461-11666603,11666691-11666792
Length = 315
Score = 53.2 bits (122), Expect = 3e-07
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +3
Query: 576 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFR 725
I FD + +EH++ L +LW L P+ + S+ W+ +G+QG DP TDFR
Sbjct: 127 IPFDGSRVEHQDALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFR 176
>12_01_0170 +
1265642-1265776,1265872-1265980,1266116-1266228,
1266814-1266882,1267042-1267157,1267428-1267461,
1267631-1267816,1267902-1268003
Length = 287
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +3
Query: 576 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFR 725
+ FDS++++H++ L +LW L P L S W+ +G+Q DP TDFR
Sbjct: 132 VPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR 181
>11_01_0168 +
1362890-1362961,1363059-1363167,1363302-1363414,
1364000-1364068,1364228-1364343,1364612-1364645,
1364812-1364997,1365083-1365184
Length = 266
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +3
Query: 576 IQFDSNNIEHEEKLLKLWSLLVPDETLESRISKQWQYIGFQGDDPKTDFR 725
+ FDS++++H++ L +LW L P L S W+ +G+Q DP TDFR
Sbjct: 111 VPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR 160
>08_02_0324 - 15766862-15766871,15767041-15767741
Length = 236
Score = 32.3 bits (70), Expect = 0.56
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = -2
Query: 511 LNGDIKALCNLGLIFFTLIIIEIDGSNKL*KLLGTNCFSKTTLSRNEITSFTSLVRDNDN 332
++G + L + G++ F L++ E DGS L + +SK R+ I F S+ +D+D+
Sbjct: 118 IHGFVYTLFDGGILAFELVVSENDGSYYLDAPIFLRAWSKIVRERSMI-CFASVGQDDDD 176
Query: 331 DFS 323
D S
Sbjct: 177 DHS 179
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = -2
Query: 751 FSNPSKPI--PRKSVLGSSPWNPIYC------HCFEIRDSRVSSGTSKDHNFNSFSSCSM 596
FS+ ++P P+ S+ S P P++C +C + + S G+S+ N ++ ++
Sbjct: 474 FSSHTRPTESPKLSLAESKPMTPLFCCSKPKCNCSKRSSRKASDGSSQGSNMSAAMDLAV 533
Query: 595 LLLSNC 578
L S C
Sbjct: 534 ALRSEC 539
>02_04_0491 +
23417790-23417859,23418550-23418773,23418951-23418964,
23419842-23419968,23420092-23420161,23420661-23420766,
23420849-23420966,23421457-23421576,23421679-23421859,
23421954-23422030,23422117-23422169,23422336-23422387,
23422683-23423885
Length = 804
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 259 RVVFLKNHFKIGLTYHCKTVQIL*NNIALERKNIQD*NNTKILY 128
RVV L + F++G CK + N++ +E K + N +I Y
Sbjct: 87 RVVLLLDVFEVGFALFCKASSTMGNSLPVESKVTVEEENDRIKY 130
>04_04_0319 +
24355275-24355401,24355504-24355603,24356271-24356618,
24356705-24356745,24356821-24356867,24358043-24358107,
24358186-24358308,24358397-24358534,24358658-24358899,
24358988-24359118,24359363-24359388,24359746-24359882,
24359964-24360376,24360514-24360550,24360643-24360667,
24360755-24360887,24361241-24361340,24362015-24362115,
24362998-24363084
Length = 806
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 501 SPFRSCLEQIWSYKNLVIEVEELRTIQFDSNNIEHE 608
+P SC E + S + L +E+ E I D+ N+E E
Sbjct: 523 TPENSCRESVKSRRRLSLELSESNNICDDAKNVEGE 558
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/66 (31%), Positives = 38/66 (57%)
Frame = +3
Query: 429 LLDPSISIIMRVKKINPRLHSAFISPFRSCLEQIWSYKNLVIEVEELRTIQFDSNNIEHE 608
L D S+ + R+ K + ++AF F S L+Q+ + NL E+ + T+Q N+E E
Sbjct: 79 LKDKSVDELQRLLK-DKEAYNAF---FNS-LDQVKTQNNLRDELRK-ETVQLARENLEKE 132
Query: 609 EKLLKL 626
+++L+L
Sbjct: 133 QRILEL 138
>01_06_0539 + 30077249-30078739
Length = 496
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 486 HSAFISPFRSCLEQIWSYKNLVIEVEELRTIQFDSNNIEHEEKLLKLWSLLVPDETLESR 665
H + + RS L IWSYKN Q S N+ ++ +++ LL D LE +
Sbjct: 399 HQSDMFKKRSGLTYIWSYKNWSAVTATFHLYQISSANL-NDLPVIRTSELLTRDIKLEGK 457
Query: 666 I-SKQWQ 683
+ +W+
Sbjct: 458 FDALEWR 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,503,269
Number of Sequences: 37544
Number of extensions: 453519
Number of successful extensions: 1117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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