Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P23
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   231   1e-61
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    29   0.74 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   3.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   6.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   6.9  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   9.1  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   9.1  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  231 bits (565), Expect = 1e-61
 Identities = 111/147 (75%), Positives = 126/147 (85%)
 Frame = +1

Query: 301 IINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTII 480
           IINT YSNKEIFLRELISN+SDALDKIRY+SL+DP  LD+ K+L+I+I P+K    L+I 
Sbjct: 20  IINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIR 79

Query: 481 DTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSSYLVADRVTVHS 660
           DTGIGMTK DL+NNLG IAKSGTK FMEA  +GADISMIGQFGVGFYS+YLVAD+V V S
Sbjct: 80  DTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADISMIGQFGVGFYSAYLVADKVQVVS 139

Query: 661 KHNDDEQYVWESSAGGSFTVRPDSGEP 741
           KHNDDEQY+WESSAGGSFTV  D+  P
Sbjct: 140 KHNDDEQYIWESSAGGSFTVTLDTDGP 166


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 319  SNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGM 498
            +N +   R++++N    L KI      DPSK     ++Y K+   + +  L   D+GI +
Sbjct: 2448 NNTKFISRDIVANG---LSKILILKDYDPSKAVRKPKIYSKVSTEERDFNLEQFDSGIDL 2504

Query: 499  TKADLVNNLG 528
            +   L+  +G
Sbjct: 2505 SVKFLLEGIG 2514



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 304 INTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIK 441
           +N   S +EI L++ I   +   D I+Y S    S ++    +Y+K
Sbjct: 377 LNEQISKEEIDLQKKIEKRNSTYDLIKYRSRVHTSLIEERNSIYLK 422


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -3

Query: 557 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 399
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 456 LVGNDLDVQLFATIEF*RIRERFIPDFV*SVR*IGNQLTKENFFV 322
           LV + LDV  F   +  ++   F+ D+  SVR   N+  K NFF+
Sbjct: 295 LVISMLDVDGFRIDKATQMTVDFLVDWAKSVRLCANRFNKSNFFI 339


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 534 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 427
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 396 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 524
           H S K    +R+   D +  +ER H+  +R+R  YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 334 FLRELISNSSDALDKIRYESL 396
           F+R+++   +D L+K+R++SL
Sbjct: 224 FIRKVVLTKADGLEKLRFQSL 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,977
Number of Sequences: 5004
Number of extensions: 66768
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)