Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P22
(936 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 50 5e-07
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 41 3e-04
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 38 0.003
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 30 0.54
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.71
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 29 0.71
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 1.6
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 27 2.9
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 3.8
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.6
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 26 6.6
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 26 8.8
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 50.0 bits (114), Expect = 5e-07
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 271 TRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNKIS 450
T ++I ++ F+ FD +DG + E+ +M LG T L+ MI+EVD DG+ I
Sbjct: 7 TDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTID 66
Query: 451 FREFL-LIYRKAR 486
F EFL ++ RK +
Sbjct: 67 FTEFLTMMARKMK 79
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Frame = +1
Query: 250 YTEFHEFTRKEIK----QYEV--TFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAM 411
+TEF +++K + EV F FD+ +G++ + E+ ++ LG + + M
Sbjct: 67 FTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADM 126
Query: 412 ISEVDEDGDNKISFREF 462
I E D DGD I++ EF
Sbjct: 127 IREADTDGDGVINYEEF 143
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 40.7 bits (91), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +1
Query: 238 FVNVYTEFHEFTRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMIS 417
FV V TE R +++ + F FD+ G + L ++R+ + L L+AMI
Sbjct: 95 FVRVMTE-KIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIE 153
Query: 418 EVDEDGDNKISFREFLLI 471
E D D D +I+ +EF+ I
Sbjct: 154 EFDLDQDGEINEQEFIAI 171
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 37.5 bits (83), Expect = 0.003
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +1
Query: 235 KFVNVYTEFHEFTRKEIKQYEVTFNKFDEGRDGFL---DLTEVKRMM--ERLGAPQTHLG 399
+F+N + F KE K + F +D RDG++ +L V +MM L Q
Sbjct: 77 EFINSLSVFSVHGNKEEK-LKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQI 135
Query: 400 LKAMISEVDEDGDNKISFREF 462
+ I EVD+D D KISF EF
Sbjct: 136 VDKTIMEVDKDRDGKISFEEF 156
Score = 33.1 bits (72), Expect = 0.058
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 268 FTRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNKI 447
F+ +EI++ F K D + G +D E + P + S VDEDG +
Sbjct: 18 FSNEEIERIRKRFIKIDANQSGSIDRNEFLSIPSVASNPLA----SRLFSVVDEDGGGDV 73
Query: 448 SFREFL 465
F+EF+
Sbjct: 74 DFQEFI 79
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 304 FNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNKISFREF 462
+ K ++ + LDL +V RM + L + L+ + D D K+SF EF
Sbjct: 303 WEKLEKEQSAQLDLGDVHRMCQMLHLNASMEFLEETFQKADADHSGKLSFEEF 355
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 29.5 bits (63), Expect = 0.71
Identities = 21/99 (21%), Positives = 40/99 (40%)
Frame = +1
Query: 193 NDKLEEGVEIKPKYKFVNVYTEFHEFTRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMER 372
+ +E ++ P N EFH+ + +Q+E + + + +L + KR + +
Sbjct: 336 SSNVESSEDVDPASLLQN--EEFHKLIEERQRQHEERLKRINANKKALEELNQKKRELAQ 393
Query: 373 LGAPQTHLGLKAMISEVDEDGDNKISFREFLLIYRKARA 489
+ L L I E D G+ ++ E KA A
Sbjct: 394 QQLKEQEL-LMQKIKETDRSGNKRLMLLETQHSLLKAEA 431
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +1
Query: 256 EFHEFTRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDG 435
++ E T +EI FNK D G+LD + E ++ ++ I EV+ D
Sbjct: 9 KYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVNVDS 67
Query: 436 DNKISFREFLLIYRKARAG 492
++ +F+ I+ + G
Sbjct: 68 SGRVEPEDFVGIFNVLKKG 86
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = +1
Query: 409 MISEVDEDGDNKISFREFLLIYRKARAGELEMDSGLDALARLTEINVEQVGVNGAKNFFE 588
++ E++E+ K RE I K + + + L E++ A+ E
Sbjct: 572 LLEEIEEENKRKQE-RELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALE 630
Query: 589 AKIEELAKSNKFHDEIIQEQEEKRR 663
AK +E A+ + + +EQE+K++
Sbjct: 631 AKRQEEARKKREEQRLKREQEKKQQ 655
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +1
Query: 265 EFTRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNK 444
EFTRK E + + D G ++ +VK + L P+ ++S + E+ K
Sbjct: 266 EFTRKSSSSVEFSDHSQDSGDPSQQNILQVKNVQAVLSIPEAESYKAQLLSSIAEEQKKK 325
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 214 VEIKPKY-KFVNVYTEFHEFTRKEIKQYEVTFNKFDEGRD 330
V+ KY + + V T + + E K+Y + FN DE D
Sbjct: 1199 VDFSEKYTQLIPVITTYTHLSEVENKKYSLRFNSIDEALD 1238
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 687 GGSNLKKK-LRYSNTNRIENDIVICLVC 767
G +LK++ L+YSN + ND +C+ C
Sbjct: 149 GSESLKERSLKYSNRLQASNDTGVCVKC 176
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 574 KNFFEAKIEELAKSNKFHDEIIQEQEEKRRGS 669
+NF + + + +AKS K +++++E E K G+
Sbjct: 147 ENFNDKRDKVIAKSRKEQEKLLEENESKSTGT 178
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 498 GNGFGFGRFS*INRNQCR 551
GN FGFG F +NR Q R
Sbjct: 93 GNNFGFGGFPRMNRRQRR 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,438
Number of Sequences: 5004
Number of extensions: 62469
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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