Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P19
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...   108   1e-24
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.91 
SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf...    29   1.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.7  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   4.8  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   6.4  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.4  
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    26   6.4  

>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score =  108 bits (259), Expect = 1e-24
 Identities = 60/131 (45%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
 Frame = +2

Query: 242 SAANNEDKQIKNQTHFGFQTVDENEKTKKVHEVFETVAGKYDLMNDVMSFGIHRVWKDIF 421
           S ++ +     + THFGF+ V E+EK   V  VF +VA KYD MND MS GIHR+WK+IF
Sbjct: 36  STSSKDTDTSSHMTHFGFKDVPEDEKEHLVKNVFSSVAKKYDEMNDAMSLGIHRLWKNIF 95

Query: 422 MARLAPMPDT---SLLDMAGGTGDITFRYIKYLQNLRSKPTEGARSS-VTVCDINQAMLD 589
           ++RL P   T    +LD+AGGTGDI FR + +  N       G R++ V V DIN  ML 
Sbjct: 96  VSRLNPGNSTVPMKILDVAGGTGDIAFRILNHATN-----HNGDRNTRVIVADINPDMLS 150

Query: 590 VGKARAERLGY 622
           VG  R+++  Y
Sbjct: 151 VGLRRSKKTPY 161



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 682 VADDTYTAYTIAFGIRNCTILIR-FXGGIRVLKPG 783
           + D++   YTIAFGIRNCT + +      RVLKPG
Sbjct: 180 IPDNSIDMYTIAFGIRNCTHIPKVLEQAYRVLKPG 214


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 313 IFVNSLKSKMSLVFDLFIFIVGSGLCG 233
           +F N L  K+ L   +F F++GS LCG
Sbjct: 153 VFCNILGRKIVLYICIFFFMLGSALCG 179


>SPAC823.06 |taf3||transcription factor TFIID complex subunit
           Taf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 446 DTSLLDMAGGTGDITFRYIKYL-QNLRSKPTEGARSSVTVCDINQAMLDVG 595
           D + + +     DIT RYI+ L +   +K   G RS   + D+  AM ++G
Sbjct: 28  DRTKVSLLNSFTDITIRYIRLLSETAMAKAEVGRRSCCDLGDLRLAMEEIG 78


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 809  SXILRAXWKSNVIKCGQGKPSTALVXYSXI 898
            S +L   W+ N I   +GK +TAL+ Y  I
Sbjct: 2370 SGVLLKFWQVNPIDASEGKNNTALLKYHDI 2399


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +2

Query: 134 SKQTNFVMALKRGLFRLAETYRPSRPHIRARLLATQSAANNEDKQIKNQTHFGFQTV 304
           S+     + +K G F+  + Y    P I   +   +S   N  + +   TH GF+ +
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANYQEVLDYYTHNGFRVI 815


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 224 RLLATQSAANNEDKQIKNQTHFGFQTVDENEKTKKVH-EVFETVAGKYD 367
           RL +   A +    ++ + +H G  T   N+KTK VH E  E +A ++D
Sbjct: 59  RLSSVSYAKSRTRLELTSSSH-GSDTRSFNDKTKNVHLERVEKIASEWD 106


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 409 PYSMYSKGHYIIH*IILACYRFEYFVNFLSFFIFVNSLKSKMSLVFDLFIFI 254
           P S+YS   +  H   +ACY +   ++ ++  +F  +L    S+   L  F+
Sbjct: 52  PCSIYSHTLHFFHHFTIACYHYSLCLSLVALLLFY-TLYPFQSITLPLMPFL 102


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 610 FCSGFSYIQHGLVYVTHCDRAASSFCR 530
           FCSG  Y  HG+++V + D     FCR
Sbjct: 8   FCSGPVYPGHGIMFVRN-DSKVFRFCR 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,591,528
Number of Sequences: 5004
Number of extensions: 75375
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)