Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P19
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 124 1e-28
07_01_1017 - 8662144-8662466,8662554-8663535 29 5.1
05_04_0163 + 18652306-18652839,18653785-18653853,18655139-186552... 29 5.1
05_01_0207 + 1493224-1493385,1493475-1493839,1494313-1494390,149... 29 5.1
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 29 6.7
04_03_1019 + 21759368-21760546 29 6.7
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858... 28 8.9
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 28 8.9
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 124 bits (298), Expect = 1e-28
Identities = 71/183 (38%), Positives = 100/183 (54%), Gaps = 7/183 (3%)
Frame = +2
Query: 290 GFQTVDENEKTKKVHEVFETVAGKYDLMNDVMSFGIHRVWKDIFMARLAPMPDTSLLDMA 469
G++ V E +K+K V VF +VA YDLMND+MS G+HR+WKD +++L P P LD+A
Sbjct: 67 GYKQVAEEDKSKLVGNVFSSVASSYDLMNDLMSVGLHRLWKDRLISKLNPFPGMKHLDVA 126
Query: 470 GGTGDITFRYIKYLQNLRSKPTEGA------RSSVTVCDINQAMLDVGKARAERLGYTKE 631
GGTGD+ FR ++ + ++ + +G + + VCDIN ML+VGK RA GY KE
Sbjct: 127 GGTGDVAFRALERINSVSHRAMQGTLTDIEEETQIYVCDINPNMLNVGKKRASERGY-KE 185
Query: 632 SSGVDIXWLCADAEQLQ*RTTPTQHILLLLASETVPY-**GLXEASEC*SXGGRFMCLXX 808
G + W+ DAE L + V + L EA GGRF+CL
Sbjct: 186 --GHCLSWIQGDAEALSFEDGSMDGYTIAFGIRNVTHIEKALSEAYRVLKRGGRFLCLEL 243
Query: 809 SXI 817
S +
Sbjct: 244 SHV 246
>07_01_1017 - 8662144-8662466,8662554-8663535
Length = 434
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 359 KYDLMNDVMSFGIHRVWKDIFMARLAPMPDTS 454
K DL + F +R WKDIF A + P T+
Sbjct: 145 KIDLQKGIPGFEKNRFWKDIFGAPICKKPRTN 176
>05_04_0163 +
18652306-18652839,18653785-18653853,18655139-18655270,
18655424-18655477,18655570-18655614,18656166-18656305,
18657107-18657232,18657325-18657361
Length = 378
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -1
Query: 630 SFV*PN-LSALAFPTSSMAWFMSHTVTELRAPSVGFERRF*RYFMYLNVMSP-VPPA-IS 460
+F PN LSA + PTSS + F H + P + F R L + P +PPA ++
Sbjct: 2 AFPSPNSLSAASHPTSSSSSFHLHLQLQQPVPHLPFPRSLPLNLPVLRLARPLLPPAPLA 61
Query: 459 SKLVSGIG 436
S GIG
Sbjct: 62 SSGSGGIG 69
>05_01_0207 +
1493224-1493385,1493475-1493839,1494313-1494390,
1496134-1496157,1496213-1496654
Length = 356
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 305 DENEKTKKVHEVFETVAGKYDLMNDVMSFGIH-RVWKDIFMARLAPMPDTSLLDMAGGTG 481
D+N +F+ V+ YD+++D I+ + ++ A AP P TS GG G
Sbjct: 34 DKNRSPHADDSLFKQVSEAYDVLSDPQKRAIYDQFGEEGLKAGAAPPPTTSSSSSHGGGG 93
Query: 482 DITF 493
F
Sbjct: 94 GFRF 97
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 443 PDTSLLDMAGGTGDITFRYIKYLQNLRSKPTEGARSSVTV 562
P + L++ G + +Y +YLQ+L + E A S VT+
Sbjct: 334 PQETELEIEENEGCVPKKYYEYLQSLNDRQREAACSDVTI 373
>04_03_1019 + 21759368-21760546
Length = 392
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 482 DITFRYIKYLQNLRSKPTEGARSSVTVCDINQAMLDVGKAR-AERLGYTKESSGVD 646
D +Y + NLRS P+ +RS VC +N + R AE + E G+D
Sbjct: 122 DAAAKYALAVDNLRSVPSSASRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLD 177
>07_03_0583 -
19684388-19684498,19685083-19685216,19685765-19685888,
19685982-19686251,19686961-19687155,19687236-19687328,
19687411-19687539,19687646-19689277
Length = 895
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 700 CRCRPLLKLFSISTQPXYVHTTGFLCVT*PFCSGFSYIQHGLVYVTHCD 554
CR R L+ + S+ + G+ C PFCSG Y++ + +H D
Sbjct: 224 CRSRGLMDMTSMLSDAEVFVKKGWSC---PFCSGMIYVEFA-AFKSHID 268
>02_05_0877 +
32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 451 GIRHWCQASHEYVFPYSMYSKGHYIIH*II 362
G H C A H P+S ++ HY IH +I
Sbjct: 824 GNNHDCNADHVPGQPFSNFNDSHYYIHPLI 853
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,947,976
Number of Sequences: 37544
Number of extensions: 470161
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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