Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P19
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q (ubi...   133   1e-31
U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell l...    29   4.6  
AY204188-1|AAO39192.1|  364|Caenorhabditis elegans nuclear recep...    29   4.6  
AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.     29   4.6  
AF100669-5|AAU05545.1|  364|Caenorhabditis elegans Nuclear hormo...    29   4.6  
AF100669-4|AAM97936.1|  395|Caenorhabditis elegans Nuclear hormo...    29   4.6  

>L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 5 protein.
          Length = 285

 Score =  133 bits (322), Expect = 1e-31
 Identities = 73/147 (49%), Positives = 91/147 (61%)
 Frame = +2

Query: 239 QSAANNEDKQIKNQTHFGFQTVDENEKTKKVHEVFETVAGKYDLMNDVMSFGIHRVWKDI 418
           Q  ++N+  +   +THFGF  VDE EK +KVH VF  VA KYDLMND MS G+HR+WKD 
Sbjct: 27  QVNSDNKRSEPGKKTHFGFTDVDEAEKEQKVHHVFANVAKKYDLMNDAMSMGVHRLWKDY 86

Query: 419 FMARLAPMPDTSLLDMAGGTGDITFRYIKYLQNLRSKPTEGARSSVTVCDINQAMLDVGK 598
           ++  L    +   LDMAGGTGDI FR       LR  PT    + VTV DINQ MLDVGK
Sbjct: 87  YVGGLQVPYNAKCLDMAGGTGDIAFRI------LRHSPT----AKVTVSDINQPMLDVGK 136

Query: 599 ARAERLGYTKESSGVDIXWLCADAEQL 679
            RAE+    ++       W+CA+AEQ+
Sbjct: 137 KRAEK---ERDIQPSRAEWVCANAEQM 160



 Score = 33.5 bits (73), Expect = 0.21
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 691 DTYTAYTIAFGIRNCTILIR-FXGGIRVLKPGRTLYV 798
           +TY  +T++FGIRNCT   +      RVLKPG  L +
Sbjct: 165 NTYDLFTMSFGIRNCTHPEKVVREAFRVLKPGGQLAI 201


>U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell
           lineage protein 23 protein.
          Length = 665

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 197 RPSRPHIRARLLATQSAANNEDKQIKNQTHFGFQTVDE 310
           R  RP +  RL+   +A +N  +Q  N  H G   VDE
Sbjct: 621 RQPRPELPVRLMQEMAAFDNMRRQQNNMDHLGGGDVDE 658


>AY204188-1|AAO39192.1|  364|Caenorhabditis elegans nuclear receptor
           NHR-104 protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 37  LKIFDIGLCDKPADLNDVCKF*M*PLQRKVINIKTNKFCD 156
           L +FD GL D+  D  D+C+     +QR++I   +NK  D
Sbjct: 275 LLLFDTGLEDQSDDCMDLCRNVRTLIQREMIQYYSNKHLD 314


>AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.
          Length = 665

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 197 RPSRPHIRARLLATQSAANNEDKQIKNQTHFGFQTVDE 310
           R  RP +  RL+   +A +N  +Q  N  H G   VDE
Sbjct: 621 RQPRPELPVRLMQEMAAFDNMRRQQNNMDHLGGGDVDE 658


>AF100669-5|AAU05545.1|  364|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 104, isoform c protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 37  LKIFDIGLCDKPADLNDVCKF*M*PLQRKVINIKTNKFCD 156
           L +FD GL D+  D  D+C+     +QR++I   +NK  D
Sbjct: 275 LLLFDTGLEDQSDDCMDLCRNVRTLIQREMIQYYSNKHLD 314


>AF100669-4|AAM97936.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 104, isoform a protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 37  LKIFDIGLCDKPADLNDVCKF*M*PLQRKVINIKTNKFCD 156
           L +FD GL D+  D  D+C+     +QR++I   +NK  D
Sbjct: 275 LLLFDTGLEDQSDDCMDLCRNVRTLIQREMIQYYSNKHLD 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,934,200
Number of Sequences: 27780
Number of extensions: 424733
Number of successful extensions: 1087
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)