Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P17
(1007 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.9
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 28 9.2
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 28 9.2
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 142 PXXXXPPXNXGXPXPXXXPXSXVPXAPPPP 231
P PP + G P P P P PPPP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 156 PPXXXGXPXPPXXPXFXGXXXPPP 227
PP G P PP P G PPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPP 730
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 141 PPXXXPPXXXGXPXPPXXPXFXGXXXPPP 227
PP PP G P PP P PPP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = +3
Query: 141 PPXXXPPXXXGXPXPPXXP-XFXGXXXPPP 227
PP PP P PP P F G PPP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 142 PXXXXPPXNXGXPXPXXXPXSXVPXAPPPP 231
P PP + G P P P P PPPP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 156 PPXXXGXPXPPXXPXFXGXXXPPP 227
PP G P PP P G PPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPP 730
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 141 PPXXXPPXXXGXPXPPXXPXFXGXXXPPP 227
PP PP G P PP P PPP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = +3
Query: 141 PPXXXPPXXXGXPXPPXXP-XFXGXXXPPP 227
PP PP P PP P F G PPP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 142 PXXXXPPXNXGXPXPXXXPXSXVPXAPPPP 231
P PP + G P P P P PPPP
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 156 PPXXXGXPXPPXXPXFXGXXXPPP 227
PP G P PP P G PPP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPP 313
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 141 PPXXXPPXXXGXPXPPXXPXFXGXXXPPP 227
PP PP G P PP P PPP
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = +3
Query: 141 PPXXXPPXXXGXPXPPXXP-XFXGXXXPPP 227
PP PP P PP P F G PPP
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +3
Query: 471 GXRPGSLRGSFXPPPXGXFPVXXXXGXXPXKRPFXXLAPXGPXPLKRAG 617
G P GS PPP G P G P P P G P +AG
Sbjct: 270 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 318
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +3
Query: 471 GXRPGSLRGSFXPPPXGXFPVXXXXGXXPXKRPFXXLAPXGPXPLKRAG 617
G P GS PPP G P G P P P G P +AG
Sbjct: 291 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 339
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +3
Query: 471 GXRPGSLRGSFXPPPXGXFPVXXXXGXXPXKRPFXXLAPXGPXPLKRAG 617
G P GS PPP G P G P P P G P +AG
Sbjct: 276 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 324
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +2
Query: 488 PXGFFFXPPXGXF-SRPPXIXGXPXXKTFXPPGSLWAXTLKKGRFPXFXP 634
P GFF PP G F PP G F PP + +G P P
Sbjct: 292 PFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHP 341
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +2
Query: 488 PXGFFFXPPXGXF-SRPPXIXGXPXXKTFXPPGSLWAXTLKKGRFPXFXP 634
P GFF PP G F PP G F PP + +G P P
Sbjct: 292 PFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHP 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,443,809
Number of Sequences: 27780
Number of extensions: 145842
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2646946214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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