Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P15
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   4.9  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   8.5  

>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 552 LIYSCYSGSVSKETSRNKNKIWIKCRVRFAYMMSTAIMHQ 671
           L ++CY  SV   T    N  W+   +   Y  +TAI  Q
Sbjct: 379 LYFACYLCSVGVYTGAGLNVTWLSANIAPHYKRATAISLQ 418


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 511  FSSANLKFTVSSSTLYIRATVDQFPKKHQEIRIKS 615
            FSS+N    ++SS   I  TV+QF ++   + ++S
Sbjct: 979  FSSSNNLAVITSSLAKIEQTVEQFTEEGFNVNVES 1013


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,487
Number of Sequences: 5004
Number of extensions: 67825
Number of successful extensions: 182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)