Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P15
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-7|AAM81115.1|  668|Caenorhabditis elegans Proteasome regu...    31   0.86 
U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome regu...    31   0.86 
U80838-5|AAT48617.1|  317|Caenorhabditis elegans Hypothetical pr...    29   6.1  
AY314779-1|AAQ84886.1|  454|Caenorhabditis elegans secretin rece...    28   8.1  
AL031620-2|CAA20927.2|  454|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U39851-7|AAM81115.1|  668|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 2, isoform a
           protein.
          Length = 668

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +3

Query: 600 NKNKIWIKCRVRFAYMMSTAIMHQSXLHDFGDLFLKNQTRPVQTMNGNIXGAMDQS 767
           +K +IW    + F    + A++ ++      DL +KNQT  V+T+N  + GA D+S
Sbjct: 158 DKREIWFVISLGFE-TTNLAMIDRAISAMPADLTIKNQTTLVETLNRVVNGAFDRS 212


>U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 2, isoform b
           protein.
          Length = 965

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +3

Query: 600 NKNKIWIKCRVRFAYMMSTAIMHQSXLHDFGDLFLKNQTRPVQTMNGNIXGAMDQS 767
           +K +IW    + F    + A++ ++      DL +KNQT  V+T+N  + GA D+S
Sbjct: 158 DKREIWFVISLGFE-TTNLAMIDRAISAMPADLTIKNQTTLVETLNRVVNGAFDRS 212


>U80838-5|AAT48617.1|  317|Caenorhabditis elegans Hypothetical
           protein F47F6.9 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +3

Query: 489 IFKSLRELFIS*PKIHSEFVDLIYSCYSGSVSKETSRNK----NKIW--IKCRVRFAYMM 650
           I K+  +L  S  K+H  F D+ +   +GS +     NK    N IW  I    +  +++
Sbjct: 48  IQKAFAKLGGSYAKLHGGFADIAFLQLTGSFTSTYYLNKLSSDNDIWDFILSMQKSKFLV 107

Query: 651 STAIMHQSXLHDFGDLFLKNQTRP 722
           +    +     +  D+FLKNQ  P
Sbjct: 108 TACSTYCEEGSEEWDIFLKNQISP 131


>AY314779-1|AAQ84886.1|  454|Caenorhabditis elegans secretin
           receptor-like proteinSEB-3 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 513 KVHEDF*RCFQNPCDFIVQLLRSLLFCLSFGDQFVSELVGQEAILL 376
           KV E++ +C Q  C     +LR L+  +S    FVS ++   AI+L
Sbjct: 91  KVVEEYAQCLQGFCRVCPDVLRDLVISVSLTLSFVSVILLVAAIVL 136


>AL031620-2|CAA20927.2|  454|Caenorhabditis elegans Hypothetical
           protein C18B12.2 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 513 KVHEDF*RCFQNPCDFIVQLLRSLLFCLSFGDQFVSELVGQEAILL 376
           KV E++ +C Q  C     +LR L+  +S    FVS ++   AI+L
Sbjct: 91  KVVEEYAQCLQGFCRVCPDVLRDLVISVSLTLSFVSVILLVAAIVL 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,233,412
Number of Sequences: 27780
Number of extensions: 378781
Number of successful extensions: 956
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)