Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P14
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 38 0.002
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.17
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.30
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.2
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 28 2.1
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 2.8
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 27 4.9
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 8.5
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 37.9 bits (84), Expect = 0.002
Identities = 29/78 (37%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = -3
Query: 730 GGGXXGXXXXGGGXFGEXPPXGXFXGFXAFXGPFXXXFFXGXXPXFXGXGXSPXGENXXP 551
GGG G GGG G P G F GF F G G G G G
Sbjct: 187 GGGFGGF---GGGSGGPPPGPGGFGGFGGFGGE--GHHHGGHGGFGGGPGGFEGGPGGFG 241
Query: 550 PPPRGXGGX-GXRGGGPG 500
P G GG G GGGPG
Sbjct: 242 GGPGGFGGGLGGFGGGPG 259
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = -2
Query: 728 GGXXGGXVXGGGGFWXXPXXGGVFXXXGLXGAF--FXXXFXGGXPXFXG 588
GG GG G GGF GG G G F F GG F G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 666 PXGGXSPKXPPPXYXXPXXPPPXP 737
P G P PPP + P PPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.30
Identities = 33/139 (23%), Positives = 35/139 (25%), Gaps = 6/139 (4%)
Frame = +3
Query: 504 GPPPRXPXPPXPRGGGGXXFSPXGEXPXPXKXGXXPXKXXXKKG-----PXKAXXPKNXP 668
G P P P P +P G P P G P P A P P
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117
Query: 669 XGGXSPKXPPPXYXXPXXPPPXPRGXTXXXXXXXXXXXXXXXXPQXPPPXHPXPPKXKKF 848
G +P P P P P P P P P PP
Sbjct: 1118 SG--APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175
Query: 849 PXFXPSXK-XGGRSXXPPP 902
P K G PPP
Sbjct: 1176 SGIPPVPKPAAGVPPVPPP 1194
Score = 29.5 bits (63), Expect = 0.69
Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Frame = +3
Query: 492 GXXPGPPPRXPXPPXPRGGGGXXFSPXGEXPXPXKXGXXPXKXXXKKG----PXKAXXPK 659
G P P P PP P +P G P P P G P A
Sbjct: 1138 GAPPVPKPSVAAPPVP--------APSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189
Query: 660 NXPXGGXSPKXPPPXYXXPXXPPP 731
P +P P P P PPP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 25.8 bits (54), Expect = 8.5
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = +3
Query: 501 PGPPPRXPXPPXPRGGGGXXFSPXGEXPXPXKXGXXPXKXXXKKGPXKAXXPKNXPXGGX 680
P P P P P G P P G P P A P P G
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK-----PSVAAPPVPAPSG-- 1157
Query: 681 SPKXPPPXYXXPXXPPP 731
+P P P P P P
Sbjct: 1158 APPVPKPSVAAPPVPAP 1174
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 637 PXRPKXXKTPPLXGFXQXPPPPXTXPPKXPPPXXGG 744
P RP+ P + PPP PP PP G
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 798 PQXPPPXHPXPPKXKKFPXFXPSXKXGGRSXXPPP 902
PQ P P PP P P G S PPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 504 GPPPRXPXPPXPRGGGGXXFSP 569
GPPP P PP GG ++P
Sbjct: 774 GPPPPPPPPPAVSAGGSRYYAP 795
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 672 GGXSPKXPPPXYXXPXXPPPXP 737
GG P PPP PPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Frame = +1
Query: 607 PPXKXXXKKAPXRPKXXKTPPLXGFXQXPPPP----XTXPPKXPPP 732
PP AP P+ G PPPP PP PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 636 PXKAXXPKNXPXGGXSPKXPPPXYXXPXXPPPXP 737
P P P G P PPP PPP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 503 GAPPPXPXPPXPPGGG 550
G PPP P PP G G
Sbjct: 759 GGPPPPPPPPGVAGAG 774
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -3
Query: 562 NXXPPPPRGXGGXGXR-GGGPGXXP 491
N PPPP GG G GG PG P
Sbjct: 73 NAAPPPPGAEGGPGAGFGGFPGAGP 97
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 491 GXPXGAPPPXPXPPXPP 541
G P APPP P PP P
Sbjct: 800 GNPFKAPPPAPLPPPAP 816
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 530 PXPPGGGXGXIFPXGGXXXXP 592
P PGGG G FP GG P
Sbjct: 80 PGGPGGGPGEGFPGGGFGFDP 100
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 507 PPPRXPXPPXPRGGGGXXFSP 569
PPP P PP GG SP
Sbjct: 945 PPPPPPPPPLVSAAGGKFVSP 965
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,399
Number of Sequences: 5004
Number of extensions: 20777
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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