Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P11
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   142   7e-35
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   6.9  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   9.1  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  142 bits (344), Expect = 7e-35
 Identities = 68/135 (50%), Positives = 86/135 (63%)
 Frame = +2

Query: 140 ERTXIMVKPDGVQRGLVGTIIERFEXXXXXXXXXXXVWPS*XLLXQHYSDLASRPFFPGL 319
           E+T I VKPD VQRGL+G II +FE           + PS  L+ +HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 320 VKYMSSXPVVPMVWEGLNVVXTGRXMLGATNPTDSHXGTIRXDLXXXLGRNIIHGSDSVE 499
           V +M+S PV  M+WEG   V TGR MLGA+NP DS  GTIR D    LGRN+ HGSDS+E
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIE 123

Query: 500 SATXXIXLWFTDTEV 544
           SA   I LWF  +E+
Sbjct: 124 SANREIKLWFQPSEI 138


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 225 KPFFSKRSIMVPTRPRCTPSGLT 157
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 414 GLVAPSX*RPVFTTLRPSHTIGTTGXELMYFTRPGKKGR 298
           G + P   RP  T+L P  T+ TT   +    RP  K +
Sbjct: 359 GSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,828
Number of Sequences: 5004
Number of extensions: 27896
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)