Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P10
(951 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 31 0.31
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 28 1.7
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 28 2.2
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.9
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 5.1
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 6.8
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 6.8
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 9.0
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 9.0
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 9.0
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 574 SPRRGRYPTPSRERERCPSHRPVPFARRSXTRAREPRMPKI 696
S RR R P R R R S RP P A + +P + ++
Sbjct: 198 SRRRSRSRRPGRSRSRRRSRRPSPSAEHNSAEENDPELQRV 238
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 583 RGRYPTPSRERERCPSHRPVPFARRSXTRAREPRMPKISRVVLQ 714
R P P+ R P+ P P + + REP+ P+++++ L+
Sbjct: 7 RAVQPPPNDSRSSTPATGPPPPIPKIKIKTREPKGPRLTKIRLK 50
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 640 PVCAMGTFLSPLTASGTFLGAVMVRTP-SDDSRDSTVSGAAP 518
P + FL+P+T SGTF + P S R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 721 NTIAKPPYLFSASWVPSLWSLISLRTGPVCAMGTFLSPLTASGTFLG-AVMVRTPSDDSR 545
N+++ S S++PS S + + +S +TASGT + +V TP+ +S
Sbjct: 567 NSLSSSTSSASTSYIPSASSSYEVASNSSDYYSQTVSSITASGTTSSTSEIVSTPASNSN 626
Query: 544 DSTVSGAA 521
+++G +
Sbjct: 627 TGSLNGTS 634
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +1
Query: 490 SSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRGRYPT 600
SS TR + R RGC T P PR G T
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAGHSHT 355
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 6.8
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Frame = +1
Query: 256 LPSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTS 435
L P++ P TTSD + V+S+P+ R S+ T + T ++
Sbjct: 260 LDEPIKALPSTTSDAPSSLLNTNVSSSPS--KFRKFLSSVIPAKTDLSAK---ESLTSST 314
Query: 436 WWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRGC--HQTGFSPSP 579
S K RK S+G+ SS VT K R+ + N H T F P
Sbjct: 315 RLSTSYKTRKRSSGV-AFSSETVTSSSKERKRSVENEMLKPHPTIFESPP 363
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 697 LFSASWVPSLWSLISLR 647
L+S+SW+P+L L+S R
Sbjct: 285 LYSSSWIPTLHDLVSTR 301
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 264 ACPVLSEDYFRPWRQLAAAS 323
+CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 519 GAAPETVESRLSSDGVLTITAPRKVPD 599
G P T+ES ++ D L I RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 622 TFLSPLTASGTFLGAVMVRTPSDDS-RDSTVSGAAP 518
+F+S +TA T GAV+V P+ + ++ VSG+ P
Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,202
Number of Sequences: 5004
Number of extensions: 56506
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -