Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P09
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    28   1.6  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   6.5  

>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 254 QISRQFSWHFDCALVTFNTAFASIYLGS*TPREKDKLR 141
           Q++R + WH D AL  +N    +  L    P+    LR
Sbjct: 175 QVTRFYRWHIDAALYDYNPPVVTTLLAVNAPQGTQTLR 212


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -3

Query: 435 KMLLYIF-EVYSYINSKSKRSQTILFKSIVRCVRLINSVALYVKLLS*QPKQINNMK 268
           ++ +Y+F E+Y   +  S  +  ++ +S+VR  +   +++LY K+++ +PK   + K
Sbjct: 265 QIAIYMFDEMYRTHHWSSFTACRLMIESLVRQNKFEEAISLYKKIIAKRPKIARDKK 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,557
Number of Sequences: 5004
Number of extensions: 40955
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)