Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P08
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0592 + 26477974-26479311                                         31   0.93 
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     30   2.8  
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476...    29   5.0  
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581...    29   6.6  
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816...    28   8.7  
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965...    28   8.7  

>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 204 PTPNLHNYPRSTSPLP---APANYQPTTASASVKRYK-YLKRLFKFNQMDFEFAAWQMVY 371
           PTP     P  T PLP    PA+   +   AS KR K  LK L +       FAA +   
Sbjct: 89  PTPTTTTTPTPTPPLPPPAPPASPAKSNKKASAKRNKSLLKLLLRETPRTRRFAA-RAGE 147

Query: 372 LFIAPQKVFRNF 407
           LF +P+   R F
Sbjct: 148 LFASPRPCTRRF 159


>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 204 PTPNLHNYPRSTSPLPAPANYQPTTASASV 293
           P+P   + P STSP P PA  +P+   ASV
Sbjct: 41  PSPPRASIPVSTSPAPLPAPAKPSLPGASV 70


>10_08_0680 -
           19846481-19846767,19847192-19847379,19847467-19847666,
           19847799-19848060,19848652-19848758
          Length = 347

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 694 FFPPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFWLASIIYYMYISFLGYS-NLXVLQT 867
           ++    L H + ++  N+   +A + SC   +T W   + Y  + +F+GYS  L +L+T
Sbjct: 163 YYEYTGLWHIYGLLAMNAWFWRAIYHSC---DTVWTEKLYYSSFAAFIGYSLILAILRT 218


>05_06_0046 -
           25157093-25157431,25157810-25157928,25158024-25158189,
           25158289-25158415,25158490-25158590,25158719-25158905,
           25159000-25159100,25159220-25160194,25160325-25160423,
           25160500-25160972,25161307-25161420,25161830-25161900,
           25162015-25162086,25162334-25162377
          Length = 995

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 301 INTSRDCSNLIKWISNSPLGKWFTCSLPLRKYSETL 408
           I +++DC N  KW S SP  KW  C   L    + L
Sbjct: 756 IGSNQDCGNNWKWPSGSP-QKWVLCCSSLSSSEKEL 790


>06_03_1303 +
           29180837-29181205,29181289-29181306,29181337-29181622,
           29185008-29186284,29186499-29187005
          Length = 818

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 744 VEEYDLEAVQQRERREKRVDVHVEGVAPTPRPDXRXRGAGACCSGT 607
           + EYD    ++RER  KRV       +P+P P           +GT
Sbjct: 508 LSEYDKRMERERERERKRVRAPSPSPSPSPSPSPSASATTPTQTGT 553


>01_06_0205 -
           27495030-27495128,27495397-27496265,27496352-27496511,
           27497136-27497208,27497311-27497430,27498454-27498618,
           27498695-27498785,27499381-27499465,27499555-27499740,
           27499843-27499899,27499998-27500282
          Length = 729

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = +3

Query: 195 STSPTPNLHNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFAAWQMVYL 374
           + SP P LHN   +TS L   A+     A  S+    Y  RL   +Q +F    W+ +  
Sbjct: 253 NASPFPALHNQISNTSSLSEVAH---AVAVKSIFHIYYNPRL---SQSEFIIPYWKFMRS 306

Query: 375 FIAPQKVFRNFNYRKHTKSQFAR 443
           F  P  V   F  R  ++    R
Sbjct: 307 FSQPFSVGMRFKLRYESEDASER 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,465,595
Number of Sequences: 37544
Number of extensions: 493306
Number of successful extensions: 1546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)