Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P08
(892 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY113422-1|AAM29427.1| 275|Drosophila melanogaster RE19904p pro... 194 1e-49
AE014297-785|AAF54267.1| 275|Drosophila melanogaster CG9773-PA ... 194 1e-49
AY075279-1|AAL68146.2| 130|Drosophila melanogaster AT30190p pro... 29 6.5
AY069786-1|AAL39931.1| 1638|Drosophila melanogaster SD02886p pro... 29 6.5
AE014297-2651|AAF55658.2| 1638|Drosophila melanogaster CG31212-P... 29 6.5
AE013599-2443|AAF57883.2| 128|Drosophila melanogaster CG18469-P... 29 6.5
BT003593-1|AAO39596.1| 253|Drosophila melanogaster GM24483p pro... 29 8.6
AY060774-1|AAL28322.1| 253|Drosophila melanogaster GH23865p pro... 29 8.6
AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein. 29 8.6
AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein. 29 8.6
AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein. 29 8.6
AE014297-2392|AAF55455.1| 253|Drosophila melanogaster CG7655-PA... 29 8.6
AE014296-1322|AAX52754.1| 961|Drosophila melanogaster CG7391-PF... 29 8.6
AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD... 29 8.6
AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC... 29 8.6
AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB... 29 8.6
AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA... 29 8.6
>AY113422-1|AAM29427.1| 275|Drosophila melanogaster RE19904p
protein.
Length = 275
Score = 194 bits (474), Expect = 1e-49
Identities = 91/164 (55%), Positives = 120/164 (73%), Gaps = 4/164 (2%)
Frame = +3
Query: 186 MKYSTSPTPNL----HNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFA 353
+KY+ SPTP++ + R SPLP PAN++ SA+ K YKYL+RL KFNQMDFEFA
Sbjct: 7 VKYTQSPTPSVVSGYSSASRLHSPLPPPANHRRDCLSATTKSYKYLRRLLKFNQMDFEFA 66
Query: 354 AWQMVYLFIAPQKVFRNFNYRKHTKSQFARDDPAFLVLLSIWLFLSSICFGLALDLTVGK 533
WQM+YLF+APQKV+RNFNYRK TKSQFARDDPAFLVLL + L ++S+ F L L+ +
Sbjct: 67 LWQMLYLFVAPQKVYRNFNYRKQTKSQFARDDPAFLVLLVVCLCVTSLGFAYVLGLSFWQ 126
Query: 534 VALFMLFVVFVDFIGAGILVSTLFWYLSNKHLRRXPXGPDVEWG 665
F+ +VVFVD I GI++++ FW ++N++LR PD+EWG
Sbjct: 127 SISFIFYVVFVDCIFVGIIIASFFWAVTNRYLRTNSLEPDIEWG 170
Score = 88.2 bits (209), Expect = 1e-17
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +1
Query: 664 GYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFWLASIIYYMYISFLGY 843
GYAFDVH+NAFFPPL LLH Q+ +N ++SQ F+S + NTFWL + YY+YI+FLGY
Sbjct: 170 GYAFDVHLNAFFPPLMLLHFIQLFFYNWLISQTWFISRFLGNTFWLMGMGYYVYITFLGY 229
Query: 844 S 846
+
Sbjct: 230 N 230
>AE014297-785|AAF54267.1| 275|Drosophila melanogaster CG9773-PA
protein.
Length = 275
Score = 194 bits (474), Expect = 1e-49
Identities = 91/164 (55%), Positives = 120/164 (73%), Gaps = 4/164 (2%)
Frame = +3
Query: 186 MKYSTSPTPNL----HNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFA 353
+KY+ SPTP++ + R SPLP PAN++ SA+ K YKYL+RL KFNQMDFEFA
Sbjct: 7 VKYTQSPTPSVVSGYSSASRLHSPLPPPANHRRDCLSATTKSYKYLRRLLKFNQMDFEFA 66
Query: 354 AWQMVYLFIAPQKVFRNFNYRKHTKSQFARDDPAFLVLLSIWLFLSSICFGLALDLTVGK 533
WQM+YLF+APQKV+RNFNYRK TKSQFARDDPAFLVLL + L ++S+ F L L+ +
Sbjct: 67 LWQMLYLFVAPQKVYRNFNYRKQTKSQFARDDPAFLVLLVVCLCVTSLGFAYVLGLSFWQ 126
Query: 534 VALFMLFVVFVDFIGAGILVSTLFWYLSNKHLRRXPXGPDVEWG 665
F+ +VVFVD I GI++++ FW ++N++LR PD+EWG
Sbjct: 127 SISFIFYVVFVDCIFVGIIIASFFWAVTNRYLRTNSLEPDIEWG 170
Score = 88.2 bits (209), Expect = 1e-17
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +1
Query: 664 GYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSCLVSNTFWLASIIYYMYISFLGY 843
GYAFDVH+NAFFPPL LLH Q+ +N ++SQ F+S + NTFWL + YY+YI+FLGY
Sbjct: 170 GYAFDVHLNAFFPPLMLLHFIQLFFYNWLISQTWFISRFLGNTFWLMGMGYYVYITFLGY 229
Query: 844 S 846
+
Sbjct: 230 N 230
>AY075279-1|AAL68146.2| 130|Drosophila melanogaster AT30190p
protein.
Length = 130
Score = 29.5 bits (63), Expect = 6.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 687 DVHVEGVAPTPRPDXRXRGAGACCSGTKIMWRPVFL 580
D EGVA P PD R A A SG ++M + +L
Sbjct: 10 DTDSEGVAAVPVPDTTPRDADATTSGARMMMQHPWL 45
>AY069786-1|AAL39931.1| 1638|Drosophila melanogaster SD02886p
protein.
Length = 1638
Score = 29.5 bits (63), Expect = 6.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 813 YDRGEPEGV*DQTRDEARLRQYT-VEEYDLEAVQQRERREKRVDVHVEGVAPTPRPDXR 640
YD GE + + + + A R +D+ A ++ + E++ VE + P PRP+ +
Sbjct: 465 YDAGEMKLLAQENAEAAMQRDLDKTRAFDVFAKKKEKEEEEQAQESVEDIKPEPRPEMK 523
>AE014297-2651|AAF55658.2| 1638|Drosophila melanogaster CG31212-PA
protein.
Length = 1638
Score = 29.5 bits (63), Expect = 6.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 813 YDRGEPEGV*DQTRDEARLRQYT-VEEYDLEAVQQRERREKRVDVHVEGVAPTPRPDXR 640
YD GE + + + + A R +D+ A ++ + E++ VE + P PRP+ +
Sbjct: 465 YDAGEMKLLAQENAEAAMQRDLDKTRAFDVFAKKKEKEEEEQAQESVEDIKPEPRPEMK 523
>AE013599-2443|AAF57883.2| 128|Drosophila melanogaster CG18469-PA
protein.
Length = 128
Score = 29.5 bits (63), Expect = 6.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 687 DVHVEGVAPTPRPDXRXRGAGACCSGTKIMWRPVFL 580
D EGVA P PD R A A SG ++M + +L
Sbjct: 8 DTDSEGVAAVPVPDTTPRDADATTSGARMMMQHPWL 43
>BT003593-1|AAO39596.1| 253|Drosophila melanogaster GM24483p
protein.
Length = 253
Score = 29.1 bits (62), Expect = 8.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 371 VNHLPSGEFEIHLIKFEQSLEVFIAFY*SAGCCWLIISRG 252
VN LP+ + I EQS ++ F + G CW++I G
Sbjct: 113 VNWLPAQSIVLWQIDVEQSAPLWWTFVITHGICWVVIFGG 152
>AY060774-1|AAL28322.1| 253|Drosophila melanogaster GH23865p
protein.
Length = 253
Score = 29.1 bits (62), Expect = 8.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 371 VNHLPSGEFEIHLIKFEQSLEVFIAFY*SAGCCWLIISRG 252
VN LP+ + I EQS ++ F + G CW++I G
Sbjct: 113 VNWLPAQSIVLWQIDVEQSAPLWWTFVITHGICWVVIFGG 152
>AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein.
Length = 1027
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/57 (21%), Positives = 35/57 (61%)
Frame = -2
Query: 861 QDRQVAVSQEGNVHVVYDRGEPEGV*DQTRDEARLRQYTVEEYDLEAVQQRERREKR 691
QD+Q+ + Q+ N+H + + Q + ++L+Q+T +++ + QQ+++++++
Sbjct: 763 QDQQMMMQQQQNLHTQHQHNLQQ----QHQSHSQLQQHTQQQHQQQQQQQQQQQQQQ 815
>AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein.
Length = 1023
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/57 (21%), Positives = 35/57 (61%)
Frame = -2
Query: 861 QDRQVAVSQEGNVHVVYDRGEPEGV*DQTRDEARLRQYTVEEYDLEAVQQRERREKR 691
QD+Q+ + Q+ N+H + + Q + ++L+Q+T +++ + QQ+++++++
Sbjct: 759 QDQQMMMQQQQNLHTQHQHNLQQ----QHQSHSQLQQHTQQQHQQQQQQQQQQQQQQ 811
>AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein.
Length = 1015
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/57 (21%), Positives = 35/57 (61%)
Frame = -2
Query: 861 QDRQVAVSQEGNVHVVYDRGEPEGV*DQTRDEARLRQYTVEEYDLEAVQQRERREKR 691
QD+Q+ + Q+ N+H + + Q + ++L+Q+T +++ + QQ+++++++
Sbjct: 759 QDQQMMMQQQQNLHTQHQHNLQQ----QHQSHSQLQQHTQQQHQQQQQQQQQQQQQQ 811
>AE014297-2392|AAF55455.1| 253|Drosophila melanogaster CG7655-PA
protein.
Length = 253
Score = 29.1 bits (62), Expect = 8.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 371 VNHLPSGEFEIHLIKFEQSLEVFIAFY*SAGCCWLIISRG 252
VN LP+ + I EQS ++ F + G CW++I G
Sbjct: 113 VNWLPAQSIVLWQIDVEQSAPLWWTFVITHGICWVVIFGG 152
>AE014296-1322|AAX52754.1| 961|Drosophila melanogaster CG7391-PF,
isoform F protein.
Length = 961
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/57 (21%), Positives = 35/57 (61%)
Frame = -2
Query: 861 QDRQVAVSQEGNVHVVYDRGEPEGV*DQTRDEARLRQYTVEEYDLEAVQQRERREKR 691
QD+Q+ + Q+ N+H + + Q + ++L+Q+T +++ + QQ+++++++
Sbjct: 697 QDQQMMMQQQQNLHTQHQHNLQQ----QHQSHSQLQQHTQQQHQQQQQQQQQQQQQQ 749
>AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD,
isoform D protein.
Length = 1027
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/57 (21%), Positives = 35/57 (61%)
Frame = -2
Query: 861 QDRQVAVSQEGNVHVVYDRGEPEGV*DQTRDEARLRQYTVEEYDLEAVQQRERREKR 691
QD+Q+ + Q+ N+H + + Q + ++L+Q+T +++ + QQ+++++++
Sbjct: 763 QDQQMMMQQQQNLHTQHQHNLQQ----QHQSHSQLQQHTQQQHQQQQQQQQQQQQQQ 815
>AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC,
isoform C protein.
Length = 1027
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/57 (21%), Positives = 35/57 (61%)
Frame = -2
Query: 861 QDRQVAVSQEGNVHVVYDRGEPEGV*DQTRDEARLRQYTVEEYDLEAVQQRERREKR 691
QD+Q+ + Q+ N+H + + Q + ++L+Q+T +++ + QQ+++++++
Sbjct: 763 QDQQMMMQQQQNLHTQHQHNLQQ----QHQSHSQLQQHTQQQHQQQQQQQQQQQQQQ 815
>AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB,
isoform B protein.
Length = 1023
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/57 (21%), Positives = 35/57 (61%)
Frame = -2
Query: 861 QDRQVAVSQEGNVHVVYDRGEPEGV*DQTRDEARLRQYTVEEYDLEAVQQRERREKR 691
QD+Q+ + Q+ N+H + + Q + ++L+Q+T +++ + QQ+++++++
Sbjct: 759 QDQQMMMQQQQNLHTQHQHNLQQ----QHQSHSQLQQHTQQQHQQQQQQQQQQQQQQ 811
>AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA,
isoform A protein.
Length = 1023
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/57 (21%), Positives = 35/57 (61%)
Frame = -2
Query: 861 QDRQVAVSQEGNVHVVYDRGEPEGV*DQTRDEARLRQYTVEEYDLEAVQQRERREKR 691
QD+Q+ + Q+ N+H + + Q + ++L+Q+T +++ + QQ+++++++
Sbjct: 759 QDQQMMMQQQQNLHTQHQHNLQQ----QHQSHSQLQQHTQQQHQQQQQQQQQQQQQQ 811
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,369,181
Number of Sequences: 53049
Number of extensions: 845080
Number of successful extensions: 2729
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2711
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4352837424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -