Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P06
(937 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 0.12
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.18
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.8
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 3.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.5
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 8.9
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 864 PXXXPPPPXXPPXXPXPXPXP 926
P PPP PP P P P P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect(2) = 0.12
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 749 PPPPPXXXXIXXXFFXXPPPPPXXKK 826
PPPPP PPPPP K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVK 34
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 721 PPPPRXXGXGGPPPPP 674
PPPP PPPPP
Sbjct: 13 PPPPGFEPPSQPPPPP 28
Score = 23.8 bits (49), Expect(2) = 0.95
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 623 PPPPPPP 643
PPPPPPP
Sbjct: 24 PPPPPPP 30
Score = 23.4 bits (48), Expect(2) = 0.12
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 608 SXXPXPPPPPPP 643
S P PPPPPP
Sbjct: 3 SLPPGNPPPPPP 14
Score = 23.4 bits (48), Expect(2) = 0.95
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 617 PXPPPPPP 640
P PPPPPP
Sbjct: 9 PPPPPPPP 16
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.18
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 721 PPPPRXXGXGGPPPPP 674
PPPP G G PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPP 780
Score = 29.9 bits (64), Expect = 0.54
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 721 PPPPRXXGXGGPPPPP 674
PPPP GPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 721 PPPPRXXGXGGPPPPP 674
P PP GGPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPP 765
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 681 GGGPPXPXXRGGGGXXVXXXXPPPXPPP 764
GG PP P G G PPP PPP
Sbjct: 759 GGPPPPPPPPGVAG---AGPPPPPPPPP 783
Score = 27.1 bits (57), Expect(2) = 0.59
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 749 PPPPPXXXXIXXXFFXXPPPPP 814
PPPPP + PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 617 PXPPPPPPP 643
P PPPPPPP
Sbjct: 775 PPPPPPPPP 783
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +3
Query: 747 PPXPPPXXXXXFXXFSXXXPPPPXXKKXXXXXXXXXFXXPXXXPPPPXXPPXXPXPXPXP 926
PP PPP + PPP P PPPP P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP----------IMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 21.0 bits (42), Expect(2) = 0.59
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 623 PPPPPP 640
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/75 (25%), Positives = 19/75 (25%)
Frame = +3
Query: 690 PPXPXXRGGGGXXVXXXXPPPXPPPXXXXXFXXFSXXXPPPPXXKKXXXXXXXXXFXXPX 869
PP P G PP P P S PP P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 870 XXPPPPXXPPXXPXP 914
PPP P P P
Sbjct: 1191 V--PPPSEAPPVPKP 1203
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 721 PPPPRXXGXGGPPP 680
PPPP G G PPP
Sbjct: 129 PPPPAGFGRGAPPP 142
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -1
Query: 757 GXGGGXXXXTXXPPPPRXXGXGGPPPPP 674
G G PPPPR G P PP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/61 (24%), Positives = 15/61 (24%)
Frame = +3
Query: 744 PPPXPPPXXXXXFXXFSXXXPPPPXXKKXXXXXXXXXFXXPXXXPPPPXXPPXXPXPXPX 923
PP PP P P P P PP P P P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483
Query: 924 P 926
P
Sbjct: 484 P 484
Score = 23.8 bits (49), Expect(2) = 6.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 623 PPPPPPP 643
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 20.6 bits (41), Expect(2) = 6.5
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2
Query: 617 PXPPPPP 637
P PPPPP
Sbjct: 311 PPPPPPP 317
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 617 PXPPPPPPP 643
P PPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 617 PXPPPPPPP 643
P PPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 617 PXPPPPPPP 643
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 617 PXPPPPPPP 643
P PPPPPPP
Sbjct: 945 PPPPPPPPP 953
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.4 bits (48), Expect(2) = 8.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 617 PXPPPPPP 640
P PPPPPP
Sbjct: 3 PAPPPPPP 10
Score = 20.6 bits (41), Expect(2) = 8.9
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2
Query: 623 PPPPPPP 643
PPPPP P
Sbjct: 6 PPPPPAP 12
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,643
Number of Sequences: 5004
Number of extensions: 24222
Number of successful extensions: 246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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