Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P05
         (980 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    41   3e-04
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    31   0.33 

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 28/89 (31%), Positives = 44/89 (49%)
 Frame = +3

Query: 339 FFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSVANIKRMGVDPNRLDYLVLSK 518
           F+  +P K   TVRVFDR ++Y   G DA+  A+  + + + +K   V  +   Y  LS 
Sbjct: 21  FYEKMP-KDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLKHHNV--SNTSYCNLSP 77

Query: 519 GNFEILIKKLLLVRRYRVEIYVADGSIKG 605
             F    + +L     RVEI+ A+ +  G
Sbjct: 78  SLFIKFAEDVLSNLAKRVEIWGANSAKTG 106


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 375 VRVFDRNDYYSIHGIDATTAAREVFSSVANIKRMGVDPNRLDYLVLS 515
           + V D+     +HGIDA  +      +VANI R  + P  LD +++S
Sbjct: 19  ILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILIS 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,189
Number of Sequences: 5004
Number of extensions: 46281
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)