Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P05
         (980 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts hom...    55   9e-08
Z81553-9|CAB04500.2|  663|Caenorhabditis elegans Hypothetical pr...    31   1.7  
Z81059-4|CAB02928.2|  228|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF016661-3|AAB66053.1|  138|Caenorhabditis elegans Hypothetical ...    28   8.8  

>AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts
           homolog) family protein 2 protein.
          Length = 849

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 23/83 (27%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
 Frame = +3

Query: 351 LPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSVANIKRMGV---DPNRLDYLVLSKG 521
           L  K P T+ +F R +Y+S++G DAT  A  +F S   +K   +   +  ++ Y+ +++G
Sbjct: 17  LKSKSPNTIAIFSRGEYFSVYGDDATFVATNIFKSDVCVKTFTLSTDNSQQMKYISVNRG 76

Query: 522 NFEILIKKLLLVRRYRVEIYVAD 590
            +E ++++ +++ R  VE+Y ++
Sbjct: 77  QYEKVVRETIVLLRCSVELYSSE 99


>Z81553-9|CAB04500.2|  663|Caenorhabditis elegans Hypothetical
           protein F56H6.11 protein.
          Length = 663

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +3

Query: 390 RNDYYSIHGIDATTAAREVFSSVANIKRMGVDPNRLDYLVLSKGNFEILIKK 545
           +N  Y ++ +DA      + S +A + + GVDP ++D ++ +   +E+  K+
Sbjct: 547 KNIKYKLYILDAIPRNHNIVSKIAPMLKSGVDPVKIDKILFNAEFYEMARKR 598


>Z81059-4|CAB02928.2|  228|Caenorhabditis elegans Hypothetical
           protein F11F1.6 protein.
          Length = 228

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 397 SLRSNTRTVVGGLSGRELKKITNACCCTESKFKACIGCKEDILRIVFIIV 248
           +L +NT       S  ++ K   A CC   +FK C+    DI++  F ++
Sbjct: 85  NLNTNTCPTFADFSD-DIFKDRFAICCISRRFKGCVDANGDIVKSGFFVI 133


>AF016661-3|AAB66053.1|  138|Caenorhabditis elegans Hypothetical
           protein F02E11.4 protein.
          Length = 138

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 396 DYYSIHGIDATTAAREVFSSVANIKRMGVDPNRLDYLVLSKGNFEILIKKLL 551
           DYY +HG+    A R V   V N++  G           SK N  ++  KLL
Sbjct: 61  DYYDLHGMTTNGAVRFVLGIVENMQFYGKIKLETGRGNHSKDNIPVIKNKLL 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,862,003
Number of Sequences: 27780
Number of extensions: 256990
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)