Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P04
         (1019 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2; ...    40   0.14 
UniRef50_Q9FLQ7 Cluster: Gb|AAD23008.1; n=1; Arabidopsis thalian...    35   2.9  
UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma j...    33   8.9  
UniRef50_P78621 Cluster: Cytokinesis protein sepA; n=14; Fungi/M...    33   8.9  

>UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           - Magnetospirillum gryphiswaldense
          Length = 374

 Score = 39.5 bits (88), Expect = 0.14
 Identities = 22/62 (35%), Positives = 22/62 (35%)
 Frame = -2

Query: 880 GGGXXKKXFFFFXPXXXXXVGGGXPPPXXXXXXXXFFXXXXXPXXGGGGGGKXXXXKKXX 701
           GGG     FFFF        GG  PPP        FF     P     GGG     KK  
Sbjct: 23  GGGAHPHLFFFFLGGGREGGGGAPPPPPARRQKFFFFPHFFFPPPPRRGGGGVFFYKKKR 82

Query: 700 GG 695
           GG
Sbjct: 83  GG 84



 Score = 37.1 bits (82), Expect = 0.73
 Identities = 24/59 (40%), Positives = 25/59 (42%)
 Frame = +3

Query: 705 FFFXXXXXPPPPPPXXGXXXXXKKXXXXXXXXGGGXPPPTXXXXXGXKKKKXFFXXPPP 881
           FFF     PPPP    G     KK        GG  PPPT       +KKK FF  PPP
Sbjct: 57  FFFPHFFFPPPPRRGGGGVFFYKK------KRGGPPPPPT------TQKKKNFFFSPPP 103



 Score = 34.7 bits (76), Expect = 3.9
 Identities = 22/63 (34%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
 Frame = -2

Query: 880 GGGXXKKXFFFFXPXXXXXVGGGXPPPXXXXXXXXFF--XXXXXPXXGGGGGGKXXXXKK 707
           GGG      FFF        GGG PPP        FF       P    GGGG     KK
Sbjct: 22  GGGGAHPHLFFFFLGGGREGGGGAPPPPPARRQKFFFFPHFFFPPPPRRGGGGVFFYKKK 81

Query: 706 XXG 698
             G
Sbjct: 82  RGG 84


>UniRef50_Q9FLQ7 Cluster: Gb|AAD23008.1; n=1; Arabidopsis
            thaliana|Rep: Gb|AAD23008.1 - Arabidopsis thaliana
            (Mouse-ear cress)
          Length = 1289

 Score = 35.1 bits (77), Expect = 2.9
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 731  PPPPPPXGGXXXXKKXXXXXXXXGGGXPPP 820
            PPPPPP GG              GGG PPP
Sbjct: 1148 PPPPPPPGGRAPGPPPPPGPRPPGGGPPPP 1177


>UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC03138 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 156

 Score = 33.5 bits (73), Expect = 8.9
 Identities = 34/114 (29%), Positives = 36/114 (31%), Gaps = 8/114 (7%)
 Frame = +2

Query: 674 GXXFFFX---PPXXFFXXXXFXPP-----PPPPXGGXXXXKKXXXXXXXXGGGXPPPHXX 829
           G  FF+    PP  FF      PP     PPPP GG              GG  PP    
Sbjct: 26  GPLFFYGAPPPPPPFFFNKKKRPPPPPGGPPPPFGGGGFPPFFHFFPPPGGGVAPPQGGG 85

Query: 830 XXXGXKKKKXFFXXPPPXKKKXXXXXFXKKXXXPPXFXXXXCXPPXXXXFFFFF 991
              G    + FF    P   K     F      PP F      PP    FFF F
Sbjct: 86  PPLGGGGFQFFFKGFLPG--KIFLGSFFFFGGNPPFFGG---FPPKRGGFFFGF 134


>UniRef50_P78621 Cluster: Cytokinesis protein sepA; n=14;
            Fungi/Metazoa group|Rep: Cytokinesis protein sepA -
            Emericella nidulans (Aspergillus nidulans)
          Length = 1790

 Score = 33.5 bits (73), Expect = 8.9
 Identities = 21/68 (30%), Positives = 21/68 (30%)
 Frame = +2

Query: 731  PPPPPPXGGXXXXKKXXXXXXXXGGGXPPPHXXXXXGXKKKKXFFXXPPPXKKKXXXXXF 910
            PPPPPP GG              G G PPP      G       F  PPP         F
Sbjct: 1056 PPPPPPPGGLGGPPPPPPPPPPGGFGGPPPPPPPPGG-------FGGPPPPPPPPPGGAF 1108

Query: 911  XKKXXXPP 934
                  PP
Sbjct: 1109 GVPPPPPP 1116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,938,585
Number of Sequences: 1657284
Number of extensions: 10151329
Number of successful extensions: 80006
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48342
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 97163815826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)