Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P04
         (1019 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   7.9  
01_03_0005 + 11568545-11569119,11569179-11569191                       25   9.7  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 734  PPPPPXGGXXXXKKXXXXXXXXG-GGXPPP 820
            PPPPP GG    +         G GG PPP
Sbjct: 1122 PPPPPIGGLGGHQAPPAPPLPEGIGGVPPP 1151


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 24.6 bits (51), Expect(2) = 9.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 756 PPXGGGGGGXXXXXKKKXXGG 694
           PP GGGGGG     +    GG
Sbjct: 115 PPTGGGGGGGGGWQQGGGGGG 135



 Score = 22.2 bits (45), Expect(2) = 9.7
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -3

Query: 807 PPPXXXXXXXXFXXXXXPPXGGGGGG 730
           PPP              P  GGGGGG
Sbjct: 59  PPPVVTPTPQCPPPPSYPSGGGGGGG 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,795,821
Number of Sequences: 37544
Number of extensions: 509167
Number of successful extensions: 8595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5255
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 3010688180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)