Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P03
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.91 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    28   1.6  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   2.1  
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos...    27   2.8  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
 Frame = -3

Query: 574 SSEAIF*PSSTVCSGANTTSSSIKCPRSLTVSMCIRVWPTMYSFRSFTTRPCAP--KHFF 401
           SS + F P+S+  + ++T SSS+  P S++ ++         S  S +     P     F
Sbjct: 116 SSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTF 175

Query: 400 NISSKSLAFSYSAVVNCNNS*FANFGPFSLLLSYRTRVAAESA*NLIFNLPLLTL*NMSF 221
           +  S S + S  +V + ++S F++  P S   SY +  +  S+ +   +    TL + S 
Sbjct: 176 SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSL 235

Query: 220 CLINVGGPPLNSSAT 176
              ++     +SS+T
Sbjct: 236 STSSIPSTSSSSSST 250


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 298 DMIEVKKRARN*RITNYYNLPLQNTRRLN 384
           DM+E+++RARN ++   Y   +Q  +R N
Sbjct: 848 DMLEMQERARNQKLMGVYEKQIQLAKRFN 876


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
 Frame = +3

Query: 135  EIKGKIRDYDKICKVAEELSGGPPTLIKQNDIFYKVNNGRLKMRFYADSAATLVRYDRSK 314
            ++ G    +  I K+ EEL      LIK++ I             Y D+ +  V +  ++
Sbjct: 1487 KLPGSDMSFPSISKIYEELRSKFDNLIKESSI------------EYPDTLSCNVIFSGNE 1534

Query: 315  EKGPKLANYELLQ-FTTAEYEKAKLLDDMLKKCLGAQGRVVKERKLYMVGQTRIHIDTV 488
             K  KL + +LLQ F+T       +++  L   L A  + ++E    M+ +   +I ++
Sbjct: 1535 RKAYKLIDEKLLQYFSTKTKNSLLIIESSLPHILKANVKQIEELPYIMIPRLESNIQSL 1593


>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 99  YLLNRQQKMRNVEIKGKIRDYDKICKVAEEL 191
           +L+NR Q+   VE+K    +Y+  CK  +E+
Sbjct: 74  FLVNRAQEEYEVEMKAAKEEYEYRCKTLKEM 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,307
Number of Sequences: 5004
Number of extensions: 67328
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)