Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P02
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.93 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.93 
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   4.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 578 GGGKPXPPPXXXGXXXFXGGXGXGXXKXXPXXXGGG 471
           GGG   PPP   G   F G  G G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 470 PPPPGXXGXFXGPXPLPPP 526
           PPPPG  G    P P PPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +2

Query: 464 KXPPPPGXXGXFXGPXPLPPPKXPXXXXLXGGXXVSPPXRG 586
           K PPPP        P P P P  P    + GG    PP  G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIP-VPPPAPIMGGPPPPPPPPG 769



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 470 PPPPGXXGXFXGPXPLPPPKXPXXXXLXGGXXVSP 574
           PPPP       G  P PPP  P      G    +P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 609 WGNPQKXXFFPXG 647
           WG PQK  FFP G
Sbjct: 10  WGKPQKDIFFPSG 22


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 470  PPPPGXXGXFXGPXPLPPPKXP 535
            PPPP       GP   PPP  P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,699
Number of Sequences: 5004
Number of extensions: 13355
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)