Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P02
(921 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.041
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.041
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.041
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.29
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.29
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 31 0.88
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 31 0.88
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.5
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.0
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 4.7
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.9 bits (79), Expect = 0.041
Identities = 27/82 (32%), Positives = 28/82 (34%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPPKXPXXXXLXGGXXVSPPXRGXXXXPXKMGXXXXXXXXXXXP 649
PPPPG GP P PPP + GG PP G P G P
Sbjct: 714 PPPPGLPPITGGPPPPPPP--GGLPPITGGPPPPPPPGG--LPPISGG----PPPPPPPP 765
Query: 650 XKXPXPKKXPXFXFFKXXAPPP 715
P P P FK PPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPP 787
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPP 526
PPPP G F G P PPP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPP 526
PPPP G GP P PPP
Sbjct: 772 PPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.9 bits (79), Expect = 0.041
Identities = 27/82 (32%), Positives = 28/82 (34%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPPKXPXXXXLXGGXXVSPPXRGXXXXPXKMGXXXXXXXXXXXP 649
PPPPG GP P PPP + GG PP G P G P
Sbjct: 714 PPPPGLPPITGGPPPPPPP--GGLPPITGGPPPPPPPGG--LPPISGG----PPPPPPPP 765
Query: 650 XKXPXPKKXPXFXFFKXXAPPP 715
P P P FK PPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPP 787
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPP 526
PPPP G F G P PPP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPP 526
PPPP G GP P PPP
Sbjct: 772 PPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.9 bits (79), Expect = 0.041
Identities = 27/82 (32%), Positives = 28/82 (34%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPPKXPXXXXLXGGXXVSPPXRGXXXXPXKMGXXXXXXXXXXXP 649
PPPPG GP P PPP + GG PP G P G P
Sbjct: 297 PPPPGLPPITGGPPPPPPP--GGLPPITGGPPPPPPPGG--LPPISGG----PPPPPPPP 348
Query: 650 XKXPXPKKXPXFXFFKXXAPPP 715
P P P FK PPP
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPP 370
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPP 526
PPPP G F G P PPP
Sbjct: 354 PPPPPPPGGFKGGPPPPPP 372
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPP 526
PPPP G GP P PPP
Sbjct: 355 PPPPPPGGFKGGPPPPPPP 373
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.1 bits (72), Expect = 0.29
Identities = 21/84 (25%), Positives = 26/84 (30%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPPKXPXXXXLXGGXXVSPPXRGXXXXPXKMGXXXXXXXXXXXP 649
PPPP G + P P PP + P + G PP R M
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 346
Query: 650 XKXPXPKKXPXFXFFKXXAPPPXK 721
P P + P PPP +
Sbjct: 347 MPPPPPPRYPSAGPGMYPPPPPSR 370
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.1 bits (72), Expect = 0.29
Identities = 21/84 (25%), Positives = 26/84 (30%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPPKXPXXXXLXGGXXVSPPXRGXXXXPXKMGXXXXXXXXXXXP 649
PPPP G + P P PP + P + G PP R M
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 356
Query: 650 XKXPXPKKXPXFXFFKXXAPPPXK 721
P P + P PPP +
Sbjct: 357 MPPPPPPRYPSAGPGMYPPPPPSR 380
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 31.5 bits (68), Expect = 0.88
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 473 PPPGXXGXFXGPXPLPPPKXPXXXXLXGGXXVSPP 577
PPPG G F P P PPP L PP
Sbjct: 664 PPPGGLGGFMPPPPPPPPMPGDLSSLLAAAPPPPP 698
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 31.5 bits (68), Expect = 0.88
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 473 PPPGXXGXFXGPXPLPPPKXPXXXXLXGGXXVSPP 577
PPPG G F P P PPP L PP
Sbjct: 664 PPPGGLGGFMPPPPPPPPMPGDLSSLLAAAPPPPP 698
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 30.7 bits (66), Expect = 1.5
Identities = 27/93 (29%), Positives = 31/93 (33%)
Frame = -2
Query: 746 RXGGFFFXFXGGGXPFX*KTXKXGXFWGGGXXGAXXEKXXFLGVXPFXGXXXXXPXGGGK 567
R GG+ GGG P + G WGGG G G + G GGG+
Sbjct: 39 RSGGWGRPGWGGGGPGWGRGG-GGSGWGGGRGGGWGNNG---GGGNWGGNGGGGNGGGGR 94
Query: 566 PXPPPXXXGXXXFXGGXGXGXXKXXPXXXGGGG 468
G GG G G GGGG
Sbjct: 95 GGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGG 127
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPPKXPXXXXLXGGXXVSPPXRGXXXXP 601
PPPP G P PPP P + GG PP G P
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPP----MLGGPPPPPPPPGGLMGP 602
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 470 PPPPGXXGXFXGPXPLPPP 526
PPPP G + P P PPP
Sbjct: 42 PPPPPCGGGYEAPPPPPPP 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,717,284
Number of Sequences: 27780
Number of extensions: 160477
Number of successful extensions: 816
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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