Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P01
(956 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990... 100 2e-21
01_01_0271 + 2243496-2243500,2245011-2245061,2245174-2245322,224... 90 3e-18
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592... 80 3e-15
04_04_0515 - 25829298-25829750,25829822-25829944,25831294-258314... 78 9e-15
01_06_1597 + 38528241-38528588,38529623-38529721,38529814-385299... 77 3e-14
05_04_0340 - 20404703-20404771,20404908-20405093,20405191-204052... 76 5e-14
08_02_1157 + 24765719-24766544,24766569-24766637,24767031-247671... 28 9.6
>04_03_0212 +
12697854-12698549,12698655-12698930,12698991-12699038,
12699659-12699715,12700965-12701163,12702267-12702373,
12702586-12702759,12702844-12703083,12703638-12703693,
12704499-12704622
Length = 658
Score = 100 bits (239), Expect = 2e-21
Identities = 51/108 (47%), Positives = 65/108 (60%)
Frame = +2
Query: 377 VFLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTW 556
+ LP GYPDSVS DY Y +W Q S I+G L+TQ +L VG+G A P AA V W
Sbjct: 195 LLLPDGYPDSVSSDYLQYSLWRGVQGIASQISGVLSTQALLYAVGLG-KGAIPTAAAVNW 253
Query: 557 VIKDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIALP 700
V+KDG G+L +IL + G D K WRL+AD+L + A +EI P
Sbjct: 254 VLKDGLGYLSKILLS-KFGRHFDVNPKGWRLFADLLENTAYGLEILTP 300
>01_01_0271 +
2243496-2243500,2245011-2245061,2245174-2245322,
2245870-2245970,2246327-2246385,2246763-2246809,
2246952-2247030,2247139-2247211,2247294-2247413,
2247685-2247744,2247881-2247994,2248921-2249016,
2249094-2249333
Length = 397
Score = 89.8 bits (213), Expect = 3e-18
Identities = 46/109 (42%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Frame = +2
Query: 383 LPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAAT---VT 553
LP G+P SVS DY Y +W I TL T +L+ VGVG T T AA+ +
Sbjct: 63 LPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTSAAASAAAIR 122
Query: 554 WVIKDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIALP 700
WV KDG G GR+L GT D KKWR+YAD + A E+ P
Sbjct: 123 WVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITP 171
>03_02_0147 -
5923117-5923215,5923882-5924069,5924885-5924977,
5925499-5925628,5925720-5925802,5925893-5925976,
5926253-5926316,5926375-5926515,5926801-5926863,
5926968-5927006,5927126-5927185,5927567-5927624,
5927708-5928099
Length = 497
Score = 79.8 bits (188), Expect = 3e-15
Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 28/135 (20%)
Frame = +2
Query: 380 FLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTWV 559
F+P+G+P SV+ DY +Q+WDT Q + I L+TQ +L +GVG+ +AT + AT W
Sbjct: 147 FVPEGFPGSVTPDYVPFQMWDTLQGLSTYIRAMLSTQALLGAIGVGEKSATVIGATFQWF 206
Query: 560 IKDGCGHLGRILFAFTRG------------------------TCL----DAYSKKWRLYA 655
++D G LG ILF F + TCL D+ +K WRL A
Sbjct: 207 LRDLTGMLGGILFTFYQVSNSLANSNRQCHLIAIDSLFTDEITCLGSNLDSNAKMWRLVA 266
Query: 656 DILNDAAMCIEIALP 700
D +ND M +++ P
Sbjct: 267 DFMNDLGMLMDLLSP 281
>04_04_0515 -
25829298-25829750,25829822-25829944,25831294-25831473,
25831687-25831784,25831914-25832007,25832090-25832149,
25832350-25832434,25832513-25832562
Length = 380
Score = 78.2 bits (184), Expect = 9e-15
Identities = 40/111 (36%), Positives = 59/111 (53%)
Frame = +2
Query: 368 FTNVFLPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAAT 547
F N F P GYP SV+ Y Y + Q F S + L+TQ +L G+ T A A
Sbjct: 5 FLNKFFPSGYPYSVNEGYLTYTKFRALQHFSSAMLHVLSTQSLLFAAGLRPTPAQ--ATA 62
Query: 548 VTWVIKDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIALP 700
V+W++KDG H G+++ + G +D+ K WR+ AD+L D +E+ P
Sbjct: 63 VSWILKDGMQHAGKLICS-GMGARMDSEPKSWRILADVLYDFGTALEVISP 112
>01_06_1597 +
38528241-38528588,38529623-38529721,38529814-38529927,
38530349-38530420,38530520-38530630,38530738-38530857,
38531541-38531613,38531997-38532077,38532167-38532231,
38532383-38532484,38532571-38532744,38532873-38532938
Length = 474
Score = 76.6 bits (180), Expect = 3e-14
Identities = 37/104 (35%), Positives = 57/104 (54%)
Frame = +2
Query: 383 LPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTWVI 562
+P+G+PDSV+ Y Y W + F G T+ +L VGV + TP A + W++
Sbjct: 127 VPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTRTLLSSVGVSQSKVTPGAIAINWIL 186
Query: 563 KDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIA 694
KDG G +G++LFA +G D K+ R +D+L + IE+A
Sbjct: 187 KDGAGRVGKMLFA-RQGKKFDYDLKQLRFSSDLLLEIGAGIELA 229
>05_04_0340 -
20404703-20404771,20404908-20405093,20405191-20405292,
20405400-20405464,20405551-20405631,20405983-20406055,
20406147-20406248,20406437-20406556,20406690-20406800,
20406889-20406960,20407228-20407341,20407423-20407521,
20408472-20408849
Length = 523
Score = 75.8 bits (178), Expect = 5e-14
Identities = 37/104 (35%), Positives = 56/104 (53%)
Frame = +2
Query: 383 LPKGYPDSVSRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAATVTWVI 562
+P+G+PDSV+ Y Y W + F G T+ +L VGV + AT A + W++
Sbjct: 137 VPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTRTLLNSVGVAQSRATSGAVAINWIL 196
Query: 563 KDGCGHLGRILFAFTRGTCLDAYSKKWRLYADILNDAAMCIEIA 694
KDG G +G++LFA +G D K+ R D+L + IE+A
Sbjct: 197 KDGAGRVGKMLFA-RQGKKFDYDLKQLRFSGDLLMELGAGIELA 239
>08_02_1157 +
24765719-24766544,24766569-24766637,24767031-24767180,
24767296-24768503
Length = 750
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 532 SSSCISNTNTSKHFLSS*GTCYG 464
SS+C+SN L++ GTCYG
Sbjct: 150 SSNCVSNCRPGYPILATDGTCYG 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,913,763
Number of Sequences: 37544
Number of extensions: 374561
Number of successful extensions: 864
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -