Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O24
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    89   4e-18
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...    88   1e-17
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...    85   6e-17
07_01_0243 - 1783903-1784658                                           29   5.2  
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114...    29   6.9  
01_06_1261 - 35826513-35828941,35829201-35829294                       28   9.2  

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 89.4 bits (212), Expect = 4e-18
 Identities = 42/69 (60%), Positives = 52/69 (75%)
 Frame = +2

Query: 587 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 766
           R AA  A   KK     KS+++LDVKPWDDETDMA LE+AVR++  +GLLWGA+KLVP+ 
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVG 198

Query: 767 YGIHKLQFL 793
           YGI KLQ +
Sbjct: 199 YGIKKLQIM 207


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 41/69 (59%), Positives = 51/69 (73%)
 Frame = +2

Query: 587 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 766
           R AA  A   KK     KS+++LDVKPWDDETDM  LE+AVR++  +GLLWGA+KLVP+ 
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVG 182

Query: 767 YGIHKLQFL 793
           YGI KLQ +
Sbjct: 183 YGIKKLQIM 191


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score = 85.4 bits (202), Expect = 6e-17
 Identities = 37/63 (58%), Positives = 48/63 (76%)
 Frame = +2

Query: 605 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKL 784
           +K + K     KS+++LDVKPWDDETDM  LE+AVRS+  +GL WGA+KLVP+ YGI KL
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKL 183

Query: 785 QFL 793
           Q +
Sbjct: 184 QIM 186


>07_01_0243 - 1783903-1784658
          Length = 251

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +3

Query: 411 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 530
           +C S++ P   P + PL+  +Q +L++LLL   + MM+L+
Sbjct: 59  SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95


>05_01_0166 +
           1145829-1145971,1146211-1146235,1147330-1147425,
           1147544-1147645,1147767-1147889,1147996-1148622,
           1148710-1148883,1148965-1149181,1149312-1149394,
           1149478-1149573,1149676-1149724,1149850-1150088,
           1150547-1150618,1150694-1150804,1150930-1151282,
           1151377-1151464,1151691-1151789,1151860-1151991,
           1152119-1152222,1153179-1153215,1153334-1153367,
           1153451-1153467
          Length = 1006

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 723 LMASCGVPLN*CLWLMVSISCNSC-VVEDDKVL 818
           L   C VP    LW+   +  NSC ++  DKV+
Sbjct: 210 LFEKCSVPYRLALWIAQKVDVNSCDIIVRDKVI 242


>01_06_1261 - 35826513-35828941,35829201-35829294
          Length = 840

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +2

Query: 260 KAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 439
           K  +ES S+  +V  LAG  + E+  KVISLE         I+ ++N    LQ R+++LE
Sbjct: 313 KQKFESSSEASAVH-LAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLDSLE 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,288,948
Number of Sequences: 37544
Number of extensions: 342275
Number of successful extensions: 736
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)