Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O22
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...   233   3e-62
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...   137   2e-33
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    39   0.001
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   5.0  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   5.0  

>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score =  233 bits (570), Expect = 3e-62
 Identities = 109/165 (66%), Positives = 128/165 (77%)
 Frame = +1

Query: 307 DEDADECGPQLISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADK 486
           +ED    GP  +  LEGNGIT+ DIKK+ EAGY+TVES+AY PK+ L+ IKGISEAKADK
Sbjct: 36  EEDEAAAGPMPLQMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLLLIKGISEAKADK 95

Query: 487 ILAEASKLVPMGFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGK 666
           +L EASKLVPMGFTTATE+H +R+E+I +TTGSK+LD LL               FRTGK
Sbjct: 96  LLGEASKLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRTGK 155

Query: 667 TQLCHTLAVTCQLPIEQSGGEGKCMYIDTEGTFXPERLLAVAQRY 801
           +Q+CHTLAVTCQLPI+  GGEGKC+YIDTEGTF P RLLAVA RY
Sbjct: 156 SQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPVRLLAVADRY 200


>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score =  137 bits (332), Expect = 2e-33
 Identities = 69/154 (44%), Positives = 95/154 (61%)
 Frame = +1

Query: 340 ISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVPM 519
           I  L  +GI   DI KL++AG  TV+ V  + K++L+ IKG SEAK DK+   ASK+ P 
Sbjct: 18  IEDLTAHGIGMTDIIKLKQAGVCTVQGVHMSTKRFLLKIKGFSEAKVDKLKEAASKMCPA 77

Query: 520 GFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVTC 699
            F+TA E  Q R ++  ++TGS+ L+ +L               FR GKTQ+ HTL VT 
Sbjct: 78  NFSTAMEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTA 137

Query: 700 QLPIEQSGGEGKCMYIDTEGTFXPERLLAVAQRY 801
           QLP +  G EGK  +IDTEGTF P+R+ A+A+R+
Sbjct: 138 QLPRDMGGAEGKVAFIDTEGTFRPDRIKAIAERF 171


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = +1

Query: 571 LTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVTCQLPIEQSGGEGKCMYID 750
           LTTG  +LD  L                 +GK+Q C  L +  QLP+   G     ++I 
Sbjct: 75  LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFIS 134

Query: 751 TEGTFXPERLLAVAQRYV 804
           TE     +RL  +A RY+
Sbjct: 135 TESGLETKRLFELA-RYL 151


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 794 CATASSLSGXNVPSVSMYMHLPSPPDCSMGSW 699
           CA + SL   +VP  SM +H+  P D    SW
Sbjct: 312 CAHSLSLRPIHVPD-SMALHVVIPQDAQQSSW 342


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 806 STYRCATASSLSGXNVPSVSMYMHLPSPPD 717
           STYR   +S+ +G N PS S +  + SPP+
Sbjct: 42  STYRATPSSADAGYNAPS-STFESVRSPPE 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,825
Number of Sequences: 5004
Number of extensions: 61442
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)