Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_O22
(932 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical ... 193 1e-49
AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical ... 193 1e-49
AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short i... 193 1e-49
AB011382-1|BAA24982.1| 357|Caenorhabditis elegans RecA/Rad51/Dm... 193 1e-49
AL032639-7|CAA21631.2| 465|Caenorhabditis elegans Hypothetical ... 30 2.7
AC024819-4|AAU20828.1| 469|Caenorhabditis elegans Hypothetical ... 29 3.6
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 29 3.6
>AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical
protein Y43C5A.6b protein.
Length = 357
Score = 193 bits (471), Expect = 1e-49
Identities = 89/155 (57%), Positives = 113/155 (72%)
Frame = +1
Query: 337 LISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVP 516
+I KLE +GI+SGDI KL+EAGY+T ES+A+ ++ L +KGIS+ KA+KI+ EA K V
Sbjct: 40 VIDKLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQ 99
Query: 517 MGFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVT 696
MGFTT E H KR++++Q+ TGS LDRLL +RTGKTQLCH+LAV
Sbjct: 100 MGFTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVL 159
Query: 697 CQLPIEQSGGEGKCMYIDTEGTFXPERLLAVAQRY 801
CQLPI+ GGEGKCMYIDT TF PER++A+AQRY
Sbjct: 160 CQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQRY 194
>AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical
protein Y43C5A.6a protein.
Length = 395
Score = 193 bits (471), Expect = 1e-49
Identities = 89/155 (57%), Positives = 113/155 (72%)
Frame = +1
Query: 337 LISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVP 516
+I KLE +GI+SGDI KL+EAGY+T ES+A+ ++ L +KGIS+ KA+KI+ EA K V
Sbjct: 78 VIDKLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQ 137
Query: 517 MGFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVT 696
MGFTT E H KR++++Q+ TGS LDRLL +RTGKTQLCH+LAV
Sbjct: 138 MGFTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVL 197
Query: 697 CQLPIEQSGGEGKCMYIDTEGTFXPERLLAVAQRY 801
CQLPI+ GGEGKCMYIDT TF PER++A+AQRY
Sbjct: 198 CQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQRY 232
>AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short
isoform protein.
Length = 357
Score = 193 bits (471), Expect = 1e-49
Identities = 89/155 (57%), Positives = 113/155 (72%)
Frame = +1
Query: 337 LISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVP 516
+I KLE +GI+SGDI KL+EAGY+T ES+A+ ++ L +KGIS+ KA+KI+ EA K V
Sbjct: 40 VIDKLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQ 99
Query: 517 MGFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVT 696
MGFTT E H KR++++Q+ TGS LDRLL +RTGKTQLCH+LAV
Sbjct: 100 MGFTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVL 159
Query: 697 CQLPIEQSGGEGKCMYIDTEGTFXPERLLAVAQRY 801
CQLPI+ GGEGKCMYIDT TF PER++A+AQRY
Sbjct: 160 CQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQRY 194
>AB011382-1|BAA24982.1| 357|Caenorhabditis elegans
RecA/Rad51/Dmc1-like protein protein.
Length = 357
Score = 193 bits (471), Expect = 1e-49
Identities = 89/155 (57%), Positives = 113/155 (72%)
Frame = +1
Query: 337 LISKLEGNGITSGDIKKLEEAGYHTVESVAYAPKKWLITIKGISEAKADKILAEASKLVP 516
+I KLE +GI+SGDI KL+EAGY+T ES+A+ ++ L +KGIS+ KA+KI+ EA K V
Sbjct: 40 VIDKLESSGISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQ 99
Query: 517 MGFTTATEFHQKRAEIIQLTTGSKELDRLLXXXXXXXXXXXXXXXFRTGKTQLCHTLAVT 696
MGFTT E H KR++++Q+ TGS LDRLL +RTGKTQLCH+LAV
Sbjct: 100 MGFTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVL 159
Query: 697 CQLPIEQSGGEGKCMYIDTEGTFXPERLLAVAQRY 801
CQLPI+ GGEGKCMYIDT TF PER++A+AQRY
Sbjct: 160 CQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQRY 194
>AL032639-7|CAA21631.2| 465|Caenorhabditis elegans Hypothetical
protein Y38F1A.6 protein.
Length = 465
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 349 LEGNGITSGDIKKLEEAGYHTVESVAYAPK 438
L+G G DI+ L EA H+V ++A +PK
Sbjct: 418 LKGMGFEFSDIEMLTEAASHSVPNIAISPK 447
>AC024819-4|AAU20828.1| 469|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3b protein.
Length = 469
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 331 PQLISKLEGNGITSGDIKKLEEAGYHTVESVAYA-PKKWLITIKGISEAKADKILAEA 501
P+L+ + +GI L +AGY TV +A A P K + + I A+A+ I+A A
Sbjct: 384 PELLPLMTVDGIKKARAAILFKAGYKTVGMIARANPLKLVQELGTIRMAQANSIIASA 441
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 331 PQLISKLEGNGITSGDIKKLEEAGYHTVESVAYA-PKKWLITIKGISEAKADKILAEA 501
P+L+ + +GI L +AGY TV +A A P K + + I A+A+ I+A A
Sbjct: 838 PELLPLMTVDGIKKARAAILFKAGYKTVGMIARANPLKLVQELGTIRMAQANSIIASA 895
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,902,387
Number of Sequences: 27780
Number of extensions: 342851
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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