Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O21
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   155   6e-38
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857...    28   8.7  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  155 bits (375), Expect = 6e-38
 Identities = 69/110 (62%), Positives = 89/110 (80%)
 Frame = +2

Query: 80  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 259
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 260 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 409
            + LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+  F R +  P+
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109


>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
            28085948-28086253,28086369-28086643,28087034-28087252,
            28087486-28089015,28089236-28089397,28089512-28089666,
            28090195-28091064,28091363-28091832,28091917-28091981,
            28092105-28092448,28092531-28092710,28092817-28092920,
            28093053-28093162,28093648-28093744,28094138-28094238,
            28094324-28094476,28094561-28094674,28094795-28094884,
            28094960-28095307
          Length = 2157

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = -1

Query: 226  RRRFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASSITALTSHVSNLRSGEKRQ 47
            R +F   P H +    +     R + +  GF   T M+G S +  +   V  ++S EK +
Sbjct: 1258 REKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMVGRSDMLEVDPEV--VKSNEKLE 1315

Query: 46   NLKXFPIVRXXLE 8
            N+    I++   E
Sbjct: 1316 NIDLSLILKPAAE 1328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,085,833
Number of Sequences: 37544
Number of extensions: 332149
Number of successful extensions: 806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)