Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_O17
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 27 2.8
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 3.7
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 4.8
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.4
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 6.4
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 6.4
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.4
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo... 26 8.5
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 198 VLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYGDKHDAFVALAKDSKDVDE 377
V AS+ + + + EL+ S N +++ + ++ P G HD + LA+ D++E
Sbjct: 168 VFQASMGDAISTNDELESWSNNLLLSMLDQK----NITVPIGASHDDLIVLARRYYDIEE 223
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 582 IQAGVFANKSSKFISGETLGSHQMVLVRFYL*GRVSLQENYLW*LRTS 439
++AGVF + KF + + V++ +L GR+ + E Y+ L S
Sbjct: 1420 LKAGVFHKIAEKFATEKFEAMRDTVVILCHLFGRIRMNEQYVMTLEGS 1467
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 408 YGEKDNEVLAKKYGATK 458
YGE DN L +KYG TK
Sbjct: 294 YGELDNSELFRKYGFTK 310
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 476 HYRKIIFGSSVLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEF 297
H+ KIIF + ++C Y+ +F + + Q+ I + EC K F S+++ ++F
Sbjct: 120 HFSKIIFPAQKVICLYIFLF-----ALNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDF 173
Query: 296 Y*RSF--KFVYY 267
+F FV Y
Sbjct: 174 LRTNFYRLFVIY 185
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 476 HYRKIIFGSSVLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEF 297
H+ KIIF + ++C Y+ +F + + Q+ I + EC K F S+++ ++F
Sbjct: 120 HFSKIIFPAQKVICLYIFLF-----ALNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDF 173
Query: 296 Y*RSF--KFVYY 267
+F FV Y
Sbjct: 174 LRTNFYRLFVIY 185
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 476 HYRKIIFGSSVLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEF 297
H+ KIIF + ++C Y+ +F + + Q+ I + EC K F S+++ ++F
Sbjct: 92 HFSKIIFPAQKVICLYIFLF-----ALNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDF 145
Query: 296 Y*RSF--KFVYY 267
+F FV Y
Sbjct: 146 LRTNFYRLFVIY 157
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 476 HYRKIIFGSSVLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEF 297
H+ KIIF + ++C Y+ +F + + Q+ I + EC K F S+++ ++F
Sbjct: 120 HFSKIIFPAQKVICLYIFLF-----ALNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDF 173
Query: 296 Y*RSF--KFVYY 267
+F FV Y
Sbjct: 174 LRTNFYRLFVIY 185
>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
Srk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/66 (19%), Positives = 29/66 (43%)
Frame = +3
Query: 339 FVALAKDSKDVDELLIAEVGVKDYGEKDNEVLAKKYGATKDNFPVVRLFLKGKNEPIPFD 518
F ++ ++ +D ++ + EV Y E+D+ A + ++NF + + P
Sbjct: 3 FKSIQQNIEDEGKVNVREVNPDSYAERDHGYTAGIFSDAEENFGITQQVADSTQNPTSKP 62
Query: 519 DSQGFH 536
S+ H
Sbjct: 63 KSRHAH 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,885
Number of Sequences: 5004
Number of extensions: 46518
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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