Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O17
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94...    32   0.55 
07_01_0236 - 1725061-1727070                                           31   0.95 
06_03_0119 - 16849657-16849742,16850321-16850426                       31   1.7  
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883...    29   6.7  
06_01_0272 + 2016836-2017963                                           29   6.7  

>03_01_0121 +
           940338-940637,941023-941324,941417-941969,943889-944848
          Length = 704

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 396 GVKDYGEKDNEVLAKKYGATKDNFPVVRLFLKGKNEPIPFDDSQGFHH 539
           G +D  E D E L     A + NF V     + +   +PFD S GFHH
Sbjct: 490 GSRDMDEIDFEFLGHDKCAVQTNFHVAGGGGREQIHVLPFDSSDGFHH 537


>07_01_0236 - 1725061-1727070
          Length = 669

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -2

Query: 337 ASCLSPYGNATSNFTREASNLFITLLNEISSNSTEPVDVFAREADSTAKN 188
           A  L+ + + T NF+R  SN F+ LLN+ ++ +T    +FA E D+   N
Sbjct: 106 AQGLTFFVSPTKNFSRAFSNQFLGLLNKKNNGNTSN-HIFAVELDTVLNN 154


>06_03_0119 - 16849657-16849742,16850321-16850426
          Length = 63

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -1

Query: 446 VLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISIWKCNV 303
           ++L Q +++F+TVIL   FS  +    F   R+ + +++ I +W+  +
Sbjct: 10  LVLMQIIMVFYTVILSCSFSDARTFPEFFTQRDKDLTMLSIVLWQATI 57


>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
            30288447-30288641,30288743-30289363,30289688-30290257,
            30290332-30293638,30293764-30293863,30293978-30295014,
            30295256-30295604,30296299-30296374,30296456-30297022,
            30297094-30297238,30298281-30298405,30298491-30298582,
            30298646-30298828,30298946-30299058,30299499-30299649,
            30299720-30299882
          Length = 2701

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 647  FMSFINLIASLSKLLTQPGKLRYKPVFSRTNRRSSSVVKPLGVI 516
            FM F +LI  L KL   PG+ + + +   T   S   + PLG+I
Sbjct: 2230 FMQFPSLIDHLIKLCFHPGQPKARAINISTEFSSLKRMMPLGII 2273


>06_01_0272 + 2016836-2017963
          Length = 375

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 324 DKHDAFVALAKDSKDVDELLIAEVGVKDYGEKDNEVLAKKY 446
           DK   +V   ++S  V+E L A  G      KD+ V+ KKY
Sbjct: 274 DKPGDYVVATEESHTVEEFLQAAFGYAGLNWKDHVVIDKKY 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,648,312
Number of Sequences: 37544
Number of extensions: 250238
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)