Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_O13
(971 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 44 3e-05
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 35 0.015
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.026
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.19
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.32
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 0.40
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.43
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 0.77
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 1.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 2.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.3
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 44.0 bits (99), Expect = 3e-05
Identities = 41/174 (23%), Positives = 42/174 (24%), Gaps = 4/174 (2%)
Frame = +3
Query: 375 PPPGPPFXXPXRGGG--GGGXPXXRXPPPPRGXXXXFXXXXPXPPXXGXGXXXXXXXXXX 548
PPP PP RG G G PPPP P PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 549 XXXXXXXXXGXPPXRGXPPGXPXGXXGPPXXPXPXXXXXGGXSXPXXP-PPLXXXXXXXX 725
PP P G P S P P PP
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS 430
Query: 726 XXXGGGAPXGXXXXAXPPXPPPXP-GPPXXXXXXPXXGXPPSXPXGXXAPPPXP 884
A PP PP P PP PP+ P AP P P
Sbjct: 431 LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 42.3 bits (95), Expect = 1e-04
Identities = 30/102 (29%), Positives = 31/102 (30%)
Frame = +3
Query: 582 PPXRGXPPGXPXGXXGPPXXPXPXXXXXGGXSXPXXPPPLXXXXXXXXXXXGGGAPXGXX 761
P R PP P P S P PPP G A
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR--- 411
Query: 762 XXAXPPXPPPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPXPP 887
+ PP P P PP P PPS P G A PP PP
Sbjct: 412 -TSTPPVPTPPSLPPSAPPSLPPSA-PPSLPMGAPAAPPLPP 451
Score = 31.9 bits (69), Expect = 0.14
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 786 PPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPXPPR 890
PP P PP G P P G APPP PPR
Sbjct: 337 PPPPPPPRSNAA----GSIPLPPQGRSAPPPPPPR 367
Score = 28.7 bits (61), Expect = 1.3
Identities = 37/154 (24%), Positives = 38/154 (24%), Gaps = 2/154 (1%)
Frame = +3
Query: 348 PXPXXXXVXPPPGPPFXXPXRGGGGGGXPXXRXPPPPRGXXXXFXXXXPXPPXXGXGXXX 527
P P PPP PP P G R PPP P P G
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTG---------RQPPPLSSSRAVSNPPAPPPAIPGRS--- 399
Query: 528 XXXXXXXXXXXXXXXXGXPPXRGXPPGXPXGXXGPPXXP--XPXXXXXGGXSXPXXPPPL 701
PP PP P PP P P G + P PP
Sbjct: 400 ---APALPPLGNASRTSTPPV-PTPPSLPPS--APPSLPPSAPPSLPMGAPAAPPLPPSA 453
Query: 702 XXXXXXXXXXXGGGAPXGXXXXAXPPXPPPXPGP 803
G P P PPP P P
Sbjct: 454 PIAPPLP-----AGMPAAPPLPPAAPAPPPAPAP 482
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -3
Query: 618 PXXXPGXPPGXGGXPXXPXGGGXXPPPPP 532
P P G P P G PPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -3
Query: 675 SXPPGXXXGXXXXXGXPXXPXXXPGXPPGXGGXPXXPXGGGXXPPPPP 532
S PP G P P P PP G P P P PPP
Sbjct: 434 SAPPSLPMGAP---AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.1 bits (77), Expect = 0.015
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = -2
Query: 886 GGXGGGAXXPXGXEGGXPXXGXXXXXXGG--PGXGGGXGGXAXXXXPXGAP 740
GG GG P G EGG G GG G GGG GG G P
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
Score = 34.7 bits (76), Expect = 0.020
Identities = 27/87 (31%), Positives = 27/87 (31%)
Frame = -2
Query: 886 GGXGGGAXXPXGXEGGXPXXGXXXXXXGGPGXGGGXGGXAXXXXPXGAPPPXXXXXXXXX 707
GG GG P G G G G G GGG GG G P
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF------- 247
Query: 706 XXRGGGXXGXEXPPXXXXXGXGXXGGP 626
GGG G P G G GGP
Sbjct: 248 ---GGGLGGFGGGPGGFGGGPGGHGGP 271
Score = 32.3 bits (70), Expect = 0.11
Identities = 25/83 (30%), Positives = 25/83 (30%)
Frame = -3
Query: 804 GGXGGGGGXGGXPXXXXPXGPPPXXXXXXXGAXXXGGGGXXGXSXPPGXXXGXXXXXGXP 625
G GGG G G P GP G GG G PG G G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG-- 241
Query: 624 XXPXXXPGXPPGXGGXPXXPXGG 556
P G G GG P GG
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGG 264
Score = 29.1 bits (62), Expect = 0.99
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 533 GGGGGXXPPPXGXXGXPPXPGGXPGXXXGXXG 628
GG GG P G G P GG PG G G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG 252
Score = 29.1 bits (62), Expect = 0.99
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -2
Query: 886 GGXGGGAXXPXGXEGG-XPXXGXXXXXXGGPGXGGGXG 776
GG GG P G GG G GGPG GG G
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 28.7 bits (61), Expect = 1.3
Identities = 24/84 (28%), Positives = 24/84 (28%)
Frame = -3
Query: 696 GGGXXGXSXPPGXXXGXXXXXGXPXXPXXXPGXPPGXGGXPXXPXGGGXXPPPPPXXXGX 517
GGG G PG G G G G GG P G G P G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP-------GG 246
Query: 516 XXPXXGGXXXXXKXXXXXPGGGGG 445
GG PGG GG
Sbjct: 247 FGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = +2
Query: 446 PPPPPGXXXXXFXXXXXPPXXGXXXPXXXGGGGGXXPPPXGXXGXPPXPGGXPGXXXGXX 625
PPP PG F GG GG P G G P GG G G
Sbjct: 200 PPPGPGGFGG-FGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258
Query: 626 G 628
G
Sbjct: 259 G 259
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.3 bits (75), Expect = 0.026
Identities = 43/185 (23%), Positives = 43/185 (23%), Gaps = 4/185 (2%)
Frame = +3
Query: 342 APPXPXXXXVXPPPGPPFXXPXRGGGGGGXPXXRXPPPPRGXXXXFXXXXPXPPXXG-XG 518
APP P P P P P G P P PP G
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG 1090
Query: 519 XXXXXXXXXXXXXXXXXXXGXPP---XRGXPPGXPXGXXGPPXXPXPXXXXXGGXSXPXX 689
PP G PP P P P P P
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP-VPKPSVAAPPVPVP-------SGAPPV 1142
Query: 690 PPPLXXXXXXXXXXXGGGAPXGXXXXAXPPXPPPXPGPPXXXXXXPXXGXPPSXPXGXXA 869
P P G P A PP P P G P P G PP P
Sbjct: 1143 PKP--SVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP--PVPKPAAGVPPVPPPSEAP 1198
Query: 870 PPPXP 884
P P P
Sbjct: 1199 PVPKP 1203
Score = 32.3 bits (70), Expect = 0.11
Identities = 26/95 (27%), Positives = 26/95 (27%)
Frame = +2
Query: 521 PXXXGGGGGXXPPPXGXXGXPPXPGGXPGXXXGXXGXPXXXXXPXXXPGGXLXPXXPPPP 700
P G P P P P G P P P P G P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP-----PVPAPSGA---PPVPKP 1164
Query: 701 XXXAPXXXXXXXGGGPXGXXXXGXPPXPPPPPXPP 805
AP G P G PP PPP PP
Sbjct: 1165 SVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Score = 29.9 bits (64), Expect = 0.57
Identities = 40/182 (21%), Positives = 41/182 (22%)
Frame = +3
Query: 342 APPXPXXXXVXPPPGPPFXXPXRGGGGGGXPXXRXPPPPRGXXXXFXXXXPXPPXXGXGX 521
APP P + P P P P P P P P G
Sbjct: 1082 APPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 522 XXXXXXXXXXXXXXXXXXGXPPXRGXPPGXPXGXXGPPXXPXPXXXXXGGXSXPXXPPPL 701
P P P G P P P P PPP
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP------AAGVPPVPPP- 1194
Query: 702 XXXXXXXXXXXGGGAPXGXXXXAXPPXPPPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPX 881
P PP PPP PP P G PP APP
Sbjct: 1195 -----------SEAPPVPKPSVGVPPVPPPSTAPPVPT---PSAGLPPVPVPTAKAPPVP 1240
Query: 882 PP 887
P
Sbjct: 1241 AP 1242
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +3
Query: 774 PPXPPPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPXPPRV 893
P PPP P P P P P PP P V
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSV 1099
Score = 27.5 bits (58), Expect = 3.0
Identities = 24/91 (26%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Frame = +2
Query: 545 GXXPPPXGXXGXPPXPG---GXPGXXXGXXGXPXXXXXPXXXPGGXLXPXXPP-PPXXXA 712
G P P PP P G P G P P PP PP A
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Query: 713 PXXXXXXXGGGPXGXXXXGXPPXPPPPPXPP 805
P G P PP P P P
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.19
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 777 PXPPPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPXPP 887
P P P P PP P PP G PPP PP
Sbjct: 746 PAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 31.5 bits (68), Expect = 0.19
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +2
Query: 680 PXXPPPPXXXAPXXXXXXXGGGPXGXXXXGXPPXPPPPP 796
P PPP AP P G G PP PPPPP
Sbjct: 748 PIPVPPP---APIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 30.7 bits (66), Expect = 0.32
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 689 PPPPXXXAPXXXXXXXGGGPXGXXXXGXPPXPPPP 793
PPPP P P G PP PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 30.3 bits (65), Expect = 0.43
Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Frame = +3
Query: 342 APPXPXXXXVXPPPGP-PFXXPXRGGGGGGXPXXRXPPPPRGXXXXFXXXXPXPPXXGXG 518
+PP P + P P P P P GG P PPPP P PP G
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP--PPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 29.1 bits (62), Expect = 0.99
Identities = 20/73 (27%), Positives = 20/73 (27%)
Frame = +2
Query: 446 PPPPPGXXXXXFXXXXXPPXXGXXXPXXXGGGGGXXPPPXGXXGXPPXPGGXPGXXXGXX 625
PPPPP P P GG PPP G G P P P
Sbjct: 733 PPPPPAV----IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Query: 626 GXPXXXXXPXXXP 664
G P P
Sbjct: 789 GSRYYAPAPQAEP 801
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Frame = +2
Query: 650 PXXXPGGXLXPXXPPPPXXXAPXXXXXXXGGGPXGXXXXGXP---PXPPPPPXPPXXXG 817
P P + P P P P GG P G P PPPPP P G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIM--GGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 600 PPGXPXGXXGPPXXPXPXXXXXGGXSXPXXPPP 698
PP P GPP P P G P PPP
Sbjct: 752 PPPAPI-MGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 576 GXPPXRGXPPGXPXGXXGPPXXPXPXXXXXGGXSXPXXPPP 698
G PP PPG GPP P P G S P P
Sbjct: 759 GGPPPPPPPPG--VAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 433 GXPPPPPPRXGXXKGGP 383
G PPPPPP G GP
Sbjct: 759 GGPPPPPPPPGVAGAGP 775
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 445 PPPPPGGXXXXFXXPXPXPPXXAXG 519
PPPPPG P P PP + G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/54 (29%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Frame = +2
Query: 554 PPPXGXXGXPPXPGGXPGXXXGXX-GXPXXXXXPXXXPGGXLXPXXPPPPXXXA 712
PPP P P P G P P G P PPPP A
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 445 PPPPPGGXXXXFXXPXPXPP 504
PPPPP G P P PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Frame = +3
Query: 789 PXPGPPXXXXXXPXXG----XPPSXPXGXXAPPPXPPRV 893
P P PP P PP+ G PPP PP V
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV 770
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 448 GXLXXGXPPPPPPRXGXXKGG 386
G G PPPPPP GG
Sbjct: 769 GVAGAGPPPPPPPPPAVSAGG 789
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -3
Query: 576 PXXPXGGGXXPPPPPXXXGXXXP 508
P P GG PPPPP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGP 775
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 442 GPPPPPGGXXXXFXXPXPXPP 504
GPPPPP P P PP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.32
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = +3
Query: 774 PPXP---PPXPG--PPXXXXXXPXXGXPPSXPXGXXAPPPXPPRV 893
PP P PP P PP P PPS P A PP PP+V
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKS-PPSAPSLPSAVPPMPPKV 201
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = +3
Query: 774 PPXPPPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPXPP 887
PP P P P P PP+ P PP P
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect(2) = 0.40
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 767 GXPPXPPPPP 796
G PP PPPPP
Sbjct: 304 GLPPPPPPPP 313
Score = 23.4 bits (48), Expect(2) = 0.40
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 782 PPPPPXPP 805
PPPPP PP
Sbjct: 307 PPPPPPPP 314
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.43
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -2
Query: 892 TRGGXGGGAXXPXGXEGGXPXXGXXXXXXGGPGXGGGXGG 773
+RGG GG G GG G G G GG GG
Sbjct: 7 SRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46
Score = 29.1 bits (62), Expect = 0.99
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -2
Query: 889 RGGXGGGAXXPXGXEGGXPXXGXXXXXXGGPGXGGGXGG 773
RGG GG G GG G G G GG GG
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 889 RGGXGGGAXXPXGXEGGXPXXGXXXXXXGGPGXGGGXGG 773
RGG GGG G G G G GG GG
Sbjct: 25 RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 445 PPPPPGGXXXXFXXPXPXPP 504
PPPPP G P P PP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +3
Query: 774 PPXPPPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPXPP 887
PP PP P PP PPS P PPP PP
Sbjct: 5 PPGNPPPPPPPPGF-------EPPSQP-----PPPPPP 30
Score = 25.4 bits (53), Expect(2) = 0.77
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 773 PPXPPPPPXPP 805
PP PPPP PP
Sbjct: 20 PPSQPPPPPPP 30
Score = 22.2 bits (45), Expect(2) = 0.77
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = +2
Query: 632 PXXXXXPXXXPGGXLXPXXPPPP 700
P P P G P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +3
Query: 735 GGGAPXGXXXXAXPPXP-PPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPXP 884
G AP A P P PP PG P PP P G PP P
Sbjct: 488 GTSAPLPPTTFAPPGVPLPPIPGAPGMPNLN--MSQPPMVPPGMALPPGMP 536
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.4 bits (48), Expect(2) = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 773 PPXPPPPP 796
PP PPPPP
Sbjct: 189 PPPPPPPP 196
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 773 PPXPPPPP 796
PP PPPPP
Sbjct: 190 PPPPPPPP 197
Score = 23.4 bits (48), Expect(2) = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 782 PPPPPXPP 805
PPPPP PP
Sbjct: 190 PPPPPPPP 197
Score = 23.0 bits (47), Expect(2) = 1.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 776 PXPPPPPXP 802
P PPPPP P
Sbjct: 236 PAPPPPPPP 244
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.4 bits (48), Expect(2) = 2.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 782 PPPPPXPP 805
PPPPP PP
Sbjct: 946 PPPPPPPP 953
Score = 22.6 bits (46), Expect(2) = 2.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 773 PPXPPPPPXP 802
P PPPPP P
Sbjct: 905 PTPPPPPPLP 914
Score = 22.2 bits (45), Expect(2) = 10.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -2
Query: 427 PPPPPPRXGXXKGG 386
PPPPPP GG
Sbjct: 947 PPPPPPPLVSAAGG 960
Score = 21.4 bits (43), Expect(2) = 10.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 448 GXLXXGXPPPPPP 410
G + PPPPPP
Sbjct: 939 GVMPAFPPPPPPP 951
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 5.3
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 744 APXGXXXXAXPPXPPPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPXP 884
AP PP P P PP P PPS P PPP P
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPP---SAPPMPAGPPSAP-----PPPLP 1736
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 680 PXXPPPPXXXAPXXXXXXXGGGPXGXXXXGXPPXPPPPPXP 802
P PPPP P P PP PPPP P
Sbjct: 1705 PTPPPPPMSVPPP---------PSAPPMPAGPPSAPPPPLP 1736
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 768 AXPPXPPPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPXPP 887
A P P P PP P PP APPP P
Sbjct: 1698 APPQMSAPTP-PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.153 0.561
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,460
Number of Sequences: 5004
Number of extensions: 42606
Number of successful extensions: 390
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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