Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O13
         (971 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.34 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 773 PPXPPPPPXPPXXXG 817
           PP P PPP PP   G
Sbjct: 338 PPKPAPPPPPPSSSG 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = +3

Query: 741 GAPXGXXXXAXPPXPPPXPGPPXXXXXXPXXGXPPSXPXGXXAPPPXPP 887
           GAP         P  P    PP      P  G PP  P G  APP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPP-----NPSQGPPPGGPPG--APPSQNP 60



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = -1

Query: 668 PXGPXXGXXXXXGXXXPPXXPRGXPP 591
           P  P  G         PP  P G PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 585 PXRGXPPGXPXGXXGPP 635
           P +G PPG P G   PP
Sbjct: 42  PSQGPPPGGPPG--APP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 773  PPXPPPPP 796
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 782  PPPPPXPP 805
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 427  PPPPPPRXG 401
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 785  PPPPXPPXXXG 817
            PPPP PP   G
Sbjct: 1355 PPPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 427  PPPPPPR 407
            PPPPPPR
Sbjct: 1859 PPPPPPR 1865



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -3

Query: 585  GGXPXXPXGGGXXPPPPP 532
            G     P  G   PPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPP 1863



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 661  PXGGAXXPXPPPP 699
            P  G+  P PPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 767  GXPPXPPPPP 796
            G P  PPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.153    0.561 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,237
Number of Sequences: 438
Number of extensions: 10355
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)