Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O10
         (934 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-3|AAK27862.1|   82|Caenorhabditis elegans Hypothetical ...    48   1e-05
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      32   0.51 
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    32   0.51 
AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical ...    30   2.7  
AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AC087079-3|AAK27862.1|   82|Caenorhabditis elegans Hypothetical
           protein Y37E3.4 protein.
          Length = 82

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
 Frame = +2

Query: 275 MTRGNQRDLARAKNQKKQVEMQKKKNASEK---TGLSLQERKHRGC*INARKTTKKRGRV 445
           MTRGNQRDLAR KNQKK  + +K++ AS +    GLS+  R +R   +   K  K   + 
Sbjct: 1   MTRGNQRDLAREKNQKKLADQKKRQGASGQDGNAGLSMDARMNRDADVMRIKQEKAAAKK 60

Query: 446 SSKETS*ASS 475
            ++  + A++
Sbjct: 61  EAEAAAAAAN 70


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 296 DLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRGC*INARKTTKKRGRVSSK 454
           D  R +  KK+ +  KK+ +SE +  S +ERK +    N  K+ KKR   S +
Sbjct: 133 DEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEE 185


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 296 DLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRGC*INARKTTKKRGRVSSK 454
           D  R +  KK+ +  KK+ +SE +  S +ERK +    N  K+ KKR   S +
Sbjct: 133 DEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEE 185


>AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical
           protein Y75B8A.7 protein.
          Length = 648

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 278 TRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 397
           +R    +  +   +KK++E  KK+ A +K  LSL + K++
Sbjct: 246 SRETVAETEKMNGEKKKIEKDKKRKAGDKADLSLDDGKNK 285


>AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical
           protein C03H5.5 protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 260 NYLIRMTRGNQRDLARAKNQKKQVEMQKKKNASEKTG-LSLQERKHRGC*INARKTTKKR 436
           N L +  +  + DLAR K  +K+ E Q K    ++TG L + + ++ G  I     T +R
Sbjct: 8   NRLHQKIKKLKEDLAREKELRKEAERQLKVLLDKQTGSLEITKPENIGLFITPEPQTSRR 67

Query: 437 GRVSSKETS*ASSKLISYL 493
             +       A+SK +S L
Sbjct: 68  -PIKDNSAKPANSKTMSEL 85


>Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical
           protein F19C6.2b protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 284 GNQRDLARAKNQKKQVEMQKKKNASEK 364
           GN+ D + AK  KKQV  +KK+NA  K
Sbjct: 301 GNEDDSSNAKYAKKQVFKKKKRNAFGK 327


>Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical
           protein F19C6.2a protein.
          Length = 495

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 284 GNQRDLARAKNQKKQVEMQKKKNASEK 364
           GN+ D + AK  KKQV  +KK+NA  K
Sbjct: 347 GNEDDSSNAKYAKKQVFKKKKRNAFGK 373


>U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical
           protein C18B2.2 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 269 IRMTRGNQRDLARAKNQKKQVE-MQKKKNASEKTGLSL 379
           + M+  ++  L R  N  + ++ +QKK NASE TG SL
Sbjct: 148 MNMSEWDKESLCRGDNTFRHLKSLQKKYNASEMTGWSL 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,731,974
Number of Sequences: 27780
Number of extensions: 280598
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)