Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_O09
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 103 2e-22
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 102 5e-22
07_03_1461 - 26700613-26700621,26700784-26700851,26701778-267019... 32 0.73
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 31 1.3
11_01_0570 - 4529901-4529962,4530725-4530800,4531247-4531306,453... 29 3.9
04_03_1025 + 21803807-21805249 29 3.9
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 28 9.0
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 103 bits (247), Expect = 2e-22
Identities = 44/72 (61%), Positives = 57/72 (79%)
Frame = +2
Query: 296 KPHTRNLFQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 475
+P L +ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KDFGEE
Sbjct: 65 QPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEE 124
Query: 476 TPALDVLKDYLK 511
+ L++++DY+K
Sbjct: 125 SEGLNIVQDYVK 136
Score = 74.1 bits (174), Expect = 1e-13
Identities = 38/70 (54%), Positives = 47/70 (67%)
Frame = +1
Query: 109 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 288
+ VE P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPVEAPPAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 289 CDEAAYKKLV 318
CD+ Y KLV
Sbjct: 63 CDQPDYVKLV 72
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 102 bits (244), Expect = 5e-22
Identities = 43/72 (59%), Positives = 57/72 (79%)
Frame = +2
Query: 296 KPHTRNLFQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 475
+P L +ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KD+GEE
Sbjct: 65 QPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEE 124
Query: 476 TPALDVLKDYLK 511
+ L++++DY+K
Sbjct: 125 SEGLNIVQDYVK 136
Score = 74.5 bits (175), Expect = 1e-13
Identities = 38/70 (54%), Positives = 47/70 (67%)
Frame = +1
Query: 109 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 288
+ VE P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPVETPAAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 289 CDEAAYKKLV 318
CD+ Y KLV
Sbjct: 63 CDQPDYVKLV 72
>07_03_1461 -
26700613-26700621,26700784-26700851,26701778-26701919,
26702011-26702318,26702415-26702481,26702543-26702664,
26702763-26702815,26702924-26703006,26703092-26703160,
26703235-26703633
Length = 439
Score = 31.9 bits (69), Expect = 0.73
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -2
Query: 457 DDNTGAADNFPCLAILVNLAETSPFSKLFVVVNLDQWNL----MFVAQSLKQVSCMRLHH 290
DD+ AA+ AIL+N E S + L ++ L Q L + V + K VS R H+
Sbjct: 112 DDDPVAAETERIKAILLNDQEKSEATLLELLRRLQQLELTVDTLTVTEIGKAVSSYRKHN 171
Query: 289 SSQPKHIVLL 260
S Q +H+V L
Sbjct: 172 SKQIRHLVRL 181
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 187 APLAVLHSRPCCYPTRWGWWGPRLQHQP 104
+PLA +RPC +PT W P L+ P
Sbjct: 7 SPLAAAAARPCAFPTPWRCRSPPLRRLP 34
>11_01_0570 -
4529901-4529962,4530725-4530800,4531247-4531306,
4533797-4533959,4534037-4534091,4534314-4534366,
4534881-4534980,4535556-4535703,4535964-4536056
Length = 269
Score = 29.5 bits (63), Expect = 3.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 180 LQCYIHVHVVTRQDGVGGDLDF 115
++CY H H++T+ +G GGD +
Sbjct: 213 IECYEHNHLITKVEGDGGDSSY 234
>04_03_1025 + 21803807-21805249
Length = 480
Score = 29.5 bits (63), Expect = 3.9
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = -1
Query: 542 LALH-LRISSTT*GSP*AHPTLEFPRRNL**QHRSSRQFSLPCHPCQSCRDQPILQAFCC 366
L+LH LR ++ + S L +L Q+ S SLP P PI F
Sbjct: 80 LSLHRLRAAAASLDSGDHPAALHLASASLQYQYDCSHLLSLPAFP-----SHPITSRFLA 134
Query: 365 CQP*PVESDVRCTEPETSFLYAASSQFSAKTHSTAC 258
P T+P ++ YAA+ + + H+T C
Sbjct: 135 SLAPPRPGAAATTKPSSANAYAAAFPATLRAHATVC 170
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 284 RTVMKPHTRNLF-QALCNEHQIPLVK--VDNNKKLGEWAGLCKIDKDG 418
R+V KPH RNLF Q+L E Q P N++K E+ L + ++G
Sbjct: 101 RSVSKPHGRNLFLQSLVEEGQNPSTSNGGSNSQKSVEYKDLIECLENG 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,096,333
Number of Sequences: 37544
Number of extensions: 311229
Number of successful extensions: 964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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