Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O09
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    85   7e-17
AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical ...    30   2.0  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    29   6.1  
AC024863-1|AAF60877.1|  481|Caenorhabditis elegans Prion-like-(q...    29   6.1  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 85.0 bits (201), Expect = 7e-17
 Identities = 38/88 (43%), Positives = 54/88 (61%)
 Frame = +2

Query: 242 KLLTRGKQYYVFWLRTVMKPHTRNLFQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGK 421
           K L + + ++        +P    L + LC EHQIPL+KV + K +GE+ GLCK DK+GK
Sbjct: 48  KALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGK 107

Query: 422 ARKIVGCSCVVIKDFGEETPALDVLKDY 505
           ARK+VGCS  V+ ++G E     +L DY
Sbjct: 108 ARKVVGCSSAVVTNWGNEEQGRAILTDY 135



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 37/73 (50%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +1

Query: 103 MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 279
           M+D   +V   P  ++   MD   AL+ VL+ A    GL  GLHE  KALDKR+A  CVL
Sbjct: 1   MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60

Query: 280 AENCDEAAYKKLV 318
           AENCDE  Y KLV
Sbjct: 61  AENCDEPQYVKLV 73


>AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.9 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 208 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVSG 324
           GGLV G+  A KAL     V+ V++E C +A  K L +G
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSLQAG 253


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 309 LVCGFITVLSQNT*YCLPLVKSFSGFVK 226
           L+C  I ++ Q +  CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 309 LVCGFITVLSQNT*YCLPLVKSFSGFVK 226
           L+C  I ++ Q +  CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 332 NEHQIPLVKVDNNKKLGEWAGLCK 403
           N++Q+ +  V+NNKK+ +W G  K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368


>AC024863-1|AAF60877.1|  481|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform a protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 221 CTRPPW-IKAVFSTSCSATFTSMLLPDKMGLVGTSTSTSAMVVDYLTVL 78
           C   PW IK   +T C     S+L P + GLVG    T+ +++  LT L
Sbjct: 331 CKNCPWGIKD--NTYCQDDHGSVLDPSEAGLVGMGWRTATIILAILTFL 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,562
Number of Sequences: 27780
Number of extensions: 265348
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)