Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O05
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       32   0.53 
01_03_0005 + 11568545-11569119,11569179-11569191                       30   2.1  
03_05_0067 - 20460206-20460703,20461255-20461530                       29   6.6  
02_05_0686 - 30900748-30902167,30903442-30904742                       23   9.2  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 21/63 (33%), Positives = 21/63 (33%)
 Frame = +2

Query: 500 PPPPGXXFFXXFXPXGFXFXKXPPPXFFXXXPXXGXXXFXFXKXPFXXXPPFFXGGGXXP 679
           PPPP   F     P  F     PPP  F   P            PF   PP F      P
Sbjct: 235 PPPPFLPF--PLPPIPFLTPPSPPPPAFPF-PLPPWPWAPPPAFPFPHLPPIFSPPSPPP 291

Query: 680 PPP 688
           PPP
Sbjct: 292 PPP 294


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +2

Query: 434 PXXGGGGKKXXXFXPXXXGGG-XPPPPGXXFFXXFXPXGFXFXKXPPPXF 580
           P  GGGG     +     GGG  P PP    F  + P  F +   PPP +
Sbjct: 115 PPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLPYFP--FYYYSPPPPFY 162


>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 499 PPPPXXXFFXXFXPPGVXXXKXPPP 573
           PPPP   +F    PP     + PPP
Sbjct: 25  PPPPPPQYFQGAHPPAAMWGQPPPP 49



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +3

Query: 477 PPXXGGGXPPPXGXXFFXXFXPXGXXFXXPPPPXFFXSPXXXG 605
           PP      PPP    +F    P    +  PPPP     P   G
Sbjct: 17  PPQYFQAGPPPPPPQYFQGAHPPAAMWGQPPPPQAAPPPAPAG 59


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 23.4 bits (48), Expect(2) = 9.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 270 PXPXXXPPPPPXGG 311
           P P   PPPPP  G
Sbjct: 330 PPPKAAPPPPPPKG 343



 Score = 23.0 bits (47), Expect(2) = 9.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 288 PPPPPXGGXKK 320
           PPPPP GG  +
Sbjct: 378 PPPPPKGGASR 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,922,617
Number of Sequences: 37544
Number of extensions: 410065
Number of successful extensions: 1259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)