Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_O05
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.84
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.84
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 31 1.1
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 1.9
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 30 2.6
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 30 2.6
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 5.9
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.5 bits (68), Expect = 0.84
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +3
Query: 462 PKXFXPPXXGGGXPPPXGXXFFXXFXPXGXXF-XXPPPPXFFXSP 593
P F PP G G PP F P PPPP F +P
Sbjct: 70 PNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAP 114
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 481 PXXGGXPPPPXXXFFXXFXPPGVXXXKXPPPXXFFXXP 594
P GG PPPP F PP PPP F P
Sbjct: 78 PGPGGIPPPP-PMFAGGIPPPPPMMGGIPPPPPMFGAP 114
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.84
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 513 PGGGGXPPPXXXGKXFXXFXPPPP 442
PG GG PPP G + PPPP
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPP 351
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +1
Query: 481 PXXGGXPPPPXXXFFXXFXPPGVXXXKXPPPXXFFXXPXXXG 606
P G PPPP PPG+ PPP F P G
Sbjct: 291 PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 332
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.84
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 513 PGGGGXPPPXXXGKXFXXFXPPPP 442
PG GG PPP G + PPPP
Sbjct: 338 PGMGGMPPPPPPGMRYPGGMPPPP 361
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +1
Query: 481 PXXGGXPPPPXXXFFXXFXPPGVXXXKXPPPXXFFXXPXXXG 606
P G PPPP PPG+ PPP F P G
Sbjct: 301 PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 342
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 435 PXXGGGXKXPKXFXPPXXGGGXPP 506
P GG + P F PP GGG PP
Sbjct: 130 PSPGGPMQPPHGFAPPPMGGGVPP 153
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +3
Query: 426 PXXPXXGGGXKXPKXFXPPXXGGGXPPPXGXXFFXXFXPXGXXFXXPPPPXF 581
P P GG P P G PP G F P G PPP F
Sbjct: 400 PQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGF 451
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = +2
Query: 434 PXXGGGGKKXXXFXPXXXGGGX-PPPPGXXFFXXFXPXGFXFXKXPPP 574
P GG G P GG PPPPG P GF PPP
Sbjct: 412 PPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPP 459
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = +3
Query: 435 PXXGGGXKXPKXFXPPXXGGGX--PPPXGXXFFXXFXPXGXXFXXPPPPXFFXSP 593
P GG P + PP G G PPP G P G PPP +P
Sbjct: 411 PPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAP 465
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 513 PGGGGXPPPXXXGKXFXXFXPPP 445
PGGG PPP G+ + PPP
Sbjct: 674 PGGGQGPPPPPQGQQYYGGPPPP 696
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 513 PGGGGXPPPXXXGKXFXXFXPPP 445
PGGG PPP G+ + PPP
Sbjct: 674 PGGGQGPPPPPQGQQYYGGPPPP 696
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 477 PPXXGGGXPPPXGXXFFXXFXPXGXXFXXPPPPXF 581
PP G G PPP G P G PPPP F
Sbjct: 719 PPPPGVGPPPPQG------IPPMGFDPNKPPPPMF 747
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,337,645
Number of Sequences: 27780
Number of extensions: 215382
Number of successful extensions: 837
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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