Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O03
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.10 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +1

Query: 736 GPPPXXPPPPXGPXXXXXPXPX-GXPPGXPXXXPXXXXXPPPXPSXNPXXXXXXPSSPV 909
           GP P     P  P     P P  G PPG P   P         PS NP      P+S +
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP---------PSQNPSQMMISPASGI 71



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/15 (60%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
 Frame = +1

Query: 727 PXXGPPPXXPP--PP 765
           P  GPPP  PP  PP
Sbjct: 42  PSQGPPPGGPPGAPP 56


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 367  FXXXHFXXPXPFXPXPF 417
            F   +F  P PF P PF
Sbjct: 1158 FTPFNFWNPPPFMPSPF 1174


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 739  PPPXXPPPPXG 771
            PPP  PPP  G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,553
Number of Sequences: 438
Number of extensions: 4840
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)