Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O02
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.8  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   5.0  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   5.0  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 211 QPYTFE-GRGHVPAASA*KTKVTNANTPNRNVIEPILFFFCS 89
           QPY +E G G      A  T +TN   PN N+  P+    C+
Sbjct: 501 QPYHYEIGSGLPQQMHATNTILTNPIDPNSNISTPVGMHLCT 542


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 519 IYYKNLVQNLFITSINILI*SDFSLFK 439
           + +K  +Q LFIT I  LI  D SLF+
Sbjct: 9   LLFKRYLQRLFITRILTLIRLDLSLFR 35


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 498 QNLFITSINILI*SDFSLFKLCCISFSSSLDHACI 394
           QNL++ +IN  +  DF   K+C +S ++   +AC+
Sbjct: 57  QNLYLDTINRKL-LDFDFEKVCSVSLTNLSVYACL 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,630
Number of Sequences: 5004
Number of extensions: 40045
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)