Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O02
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444...    30   2.3  
01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028           29   6.9  

>07_01_0597 +
           4438858-4439847,4439936-4440067,4440397-4441176,
           4441359-4441646,4441710-4441808
          Length = 762

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 202 CTVAALNARRTTNVHTARSAVLIRATPSRVQSRLLTAEAPGAPANTQPAERAFTAKT 372
           CTVAA+  R     + A + + +         RLL A AP A A  Q  +  +  KT
Sbjct: 71  CTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKT 127


>01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028
          Length = 482

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 274 ATPSRVQSRLLTAEAPGAPANTQPAERAFTAKTSSVT 384
           +TP RV S ++    PGAPA    A RA +A   +V+
Sbjct: 15  STPLRVASPVVRFRRPGAPAPVVSAARASSAAVPAVS 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,990
Number of Sequences: 37544
Number of extensions: 304604
Number of successful extensions: 924
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)