Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_O02
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82076-4|CAB04937.2|  438|Caenorhabditis elegans Hypothetical pr...    33   0.38 
U41548-4|AAA83203.1|  322|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical pr...    29   6.2  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z82076-4|CAB04937.2|  438|Caenorhabditis elegans Hypothetical
           protein W07G1.5a protein.
          Length = 438

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 277 TPSRVQSRLLTAEAPGAPANTQP 345
           TP  V SR  TA+APG PAN QP
Sbjct: 319 TPPVVASRPATAKAPGTPANRQP 341


>U41548-4|AAA83203.1|  322|Caenorhabditis elegans Hypothetical
           protein M02F4.7 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 126 LLGVFALVTFVFYAEAAGTCPLPSKVYGCSPKC 224
           L+ V +L+  VFY   A TCP  +K+Y  + KC
Sbjct: 5   LIFVISLIASVFYCTNALTCPTGTKIY--NAKC 35


>Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical
           protein W07G1.5b protein.
          Length = 450

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +1

Query: 277 TPSRVQSRLLTAEAPGAPANTQPAERAFTAKTSSVTLTKYAS 402
           TP  V SR  TA+APG PAN   +  A  AK+ S   T  +S
Sbjct: 319 TPPVVASRPATAKAPGTPANR--SATALEAKSVSQQPTPESS 358


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +3

Query: 300  AAYGGGTGSSSKHATGGTGVYCENVKCNSYEI---CKRDPMTKRMKC 431
            AA G  TGS+    + GT V C N   NS      C++  ++ R +C
Sbjct: 1463 AANGCATGSALLFPSTGTPVQCSNSGSNSCPAGYKCQKSTLSNRFQC 1509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,065
Number of Sequences: 27780
Number of extensions: 271624
Number of successful extensions: 832
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)