Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_N24
(951 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 34 0.14
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 32 0.77
01_02_0007 + 10132380-10133201 30 2.4
12_02_1174 - 26696869-26698191 29 5.4
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.4
12_02_0299 - 17051570-17052474,17053542-17053755 29 7.2
12_01_0877 - 8415186-8415272,8415696-8416310 29 7.2
06_01_0486 - 3455030-3455770 29 7.2
02_02_0582 - 11798252-11798908 29 7.2
07_03_0177 - 14770777-14772045 28 9.5
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 34.3 bits (75), Expect = 0.14
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 546 PLLGGTXXPPXSXLIXLPAPERPXXXGPQXRNPVXPP-XXPXXFPR-XXPXPXPRXNXPX 373
P+ PP L+ PAP+ P P +PV PP P P+ P P P+ P
Sbjct: 553 PMQPPVMPPPIPKLLSPPAPQAPMP--PLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPG 610
Query: 372 XPR 364
PR
Sbjct: 611 PPR 613
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 31.9 bits (69), Expect = 0.77
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = -1
Query: 495 PAPERPXXXGPQXRNPVXPPXXPXXFPRXXPXPXPRXNXPXXP 367
P P +P R P PP P P P P P P P
Sbjct: 21 PKPFKPLSSAAPFRRPSPPPPPPSPVPSPAPPPPPHRPSPSPP 63
>01_02_0007 + 10132380-10133201
Length = 273
Score = 30.3 bits (65), Expect = 2.4
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = -1
Query: 519 PXSXLIXLPAPERPXXXGPQXRNPVXPPXXPXXFPRXXPXPXPRXNXPXXP 367
P + LP P+ GPQ NP P P P P P P N P P
Sbjct: 92 PQPQPLPLPGPQPLPQPGPQP-NP-NPQPLPQPNPNPQPLPQPDPNAPPLP 140
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 5.4
Identities = 24/87 (27%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Frame = -1
Query: 621 PXTRPAXGXXPFXGVLPXFF*XRXXPLLGGTXXPPXSXLIXLPAP-ERPXXXGPQXRNPV 445
P TRP P P + P L PP + P + P P+ + P
Sbjct: 194 PPTRPPSVKPPVVQPKP-----QPPPTLPPPSPPPPPPTVPPRTPGDTPAVVEPKPQPPP 248
Query: 444 XPPXXPXXFPR-XXPXPXPRXNXPXXP 367
PP P PR P P P P P
Sbjct: 249 PPPRAPVKMPRVLEPKPSPPPPSPLPP 275
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -1
Query: 522 PPXSXLIXLPAPERPXXXGPQXRNPVXPPXXPXXFPRXXPXPXPRXNXPXXP 367
PP P P P P P PP P P P P P P P
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPP---PAKGPPPPPPPKGPSPP 365
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -1
Query: 495 PAPERPXXXGPQXRNPVXPPXXPXXFPRXXPXP 397
P P P P P PP P FP+ P P
Sbjct: 276 PFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLP 308
>12_01_0877 - 8415186-8415272,8415696-8416310
Length = 233
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = -1
Query: 489 PERPXXXGPQXRNPVXPPXXPXXFPRXXPXPXPRXNXP 376
P P P+ P+ PP P R P P P P
Sbjct: 164 PSPPREAEPEPEPPLPPPEEPTPLVRNEPSPAPTPEKP 201
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = -1
Query: 522 PPXSXLIXLPAPERPXXXGPQXRNPVXPPXXPXXFPRXXPXPXPRXNXPXXP 367
PP + P P P P P PP P P P P P P P
Sbjct: 87 PPTPPYVPSPPPYVPPYI-PPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVP 137
>02_02_0582 - 11798252-11798908
Length = 218
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +2
Query: 392 GXGXGNXRGKXXGXIGGXTGFRXWGPXXLGRSGAGSXIXSLXGG 523
G G G G G GG G G G G+GS I S G
Sbjct: 152 GAGGGESAGSSGGGFGGGNGVGRAGNAVGGGGGSGSVIGSSGSG 195
>07_03_0177 - 14770777-14772045
Length = 422
Score = 28.3 bits (60), Expect = 9.5
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +2
Query: 368 GXXGXFXRGXGXGNXRGKXXGX-IGGXTGFRXWGPXXLGRSGAG 496
G G + +G G G G G GG GF G LG G G
Sbjct: 56 GLGGGYGKGGGFGGGGGGGGGGGFGGGGGFGGGGGGGLGGGGGG 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,136
Number of Sequences: 37544
Number of extensions: 167596
Number of successful extensions: 1045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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