Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N24
         (951 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    32   0.69 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   6.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   6.5  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    29   6.5  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = -1

Query: 522 PPXSXLIXLPAPERPXXXGPQXRNPVXPPXXPXXFPRXXPXPXPRXNXPXXP 367
           PP   +   P P  P    P  R P+ PP      PR  P P PR N P  P
Sbjct: 141 PPPPRVPRTPPPRSP----PPRRPPMTPPSPQRRPPRTPPSPEPR-NPPRTP 187


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -1

Query: 546 PLLGGTXXPPXSXLIXLPAPERPXXXGPQXRNPVXPPXXP-XXFPRXXPXPXP 391
           P  G T  PP   +  +P P  P   GP     + PP  P   +P   P P P
Sbjct: 302 PPPGRTPGPPG--MPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -1

Query: 546 PLLGGTXXPPXSXLIXLPAPERPXXXGPQXRNPVXPPXXP-XXFPRXXPXPXP 391
           P  G T  PP   +  +P P  P   GP     + PP  P   +P   P P P
Sbjct: 312 PPPGRTPGPPG--MPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/51 (37%), Positives = 20/51 (39%)
 Frame = +2

Query: 368 GXXGXFXRGXGXGNXRGKXXGXIGGXTGFRXWGPXXLGRSGAGSXIXSLXG 520
           G    F  G G G   G   G  GG  GF   G    G  G G+ I SL G
Sbjct: 45  GLASNFFGGGGGGGGGGGGGGFGGGNGGFGGGGGGS-GGGGGGNNIGSLVG 94


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -1

Query: 489 PERPXXXGPQXRNPVXPPXXPXXFPRXXPXPXPR 388
           P  P   GP  R P  PP  P   P   P P  R
Sbjct: 244 PGPPGPPGPPTRRPPGPPGPPTRRPPGPPGPPTR 277


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 368 GXXGXFXRGXGXGNXRGKXXGXIGGXTGFRXWGPXXLGRSG 490
           G  G +  G   G  RG   G +GG  GFR   P   GR G
Sbjct: 536 GDFGAYGGGGFRGGMRGSPRGGMGGGGGFRGGPP---GRGG 573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,085,725
Number of Sequences: 27780
Number of extensions: 121495
Number of successful extensions: 475
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)