Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N23
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    29   6.2  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    29   6.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    25   8.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    25   8.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    25   8.6  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 292  CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 414
            C+   L  C+P   CI   Y+ +C+ IR  +   +   +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 292  CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 414
            C+   L  C+P   CI   Y+ +C+ IR  +   +   +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 24.6 bits (51), Expect(2) = 8.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 862 PXXPXGGGXFFXXXXXPPPPPP 797
           P  P GG         PPPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPP 765



 Score = 21.8 bits (44), Expect(2) = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 814 PPPPPPXXXK 785
           PPPPPP   K
Sbjct: 772 PPPPPPGGFK 781


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 24.6 bits (51), Expect(2) = 8.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 862 PXXPXGGGXFFXXXXXPPPPPP 797
           P  P GG         PPPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPP 765



 Score = 21.8 bits (44), Expect(2) = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 814 PPPPPPXXXK 785
           PPPPPP   K
Sbjct: 772 PPPPPPGGFK 781


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 24.6 bits (51), Expect(2) = 8.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 862 PXXPXGGGXFFXXXXXPPPPPP 797
           P  P GG         PPPPPP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPP 348



 Score = 21.8 bits (44), Expect(2) = 8.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 814 PPPPPPXXXK 785
           PPPPPP   K
Sbjct: 355 PPPPPPGGFK 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,929,421
Number of Sequences: 27780
Number of extensions: 275228
Number of successful extensions: 2578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2174
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)