Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N22
         (1044 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.20 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 483 PPPPPXXXGXXPPXPPXXXXXXXPXPP 563
           PPP P   G  PP PP       P PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 29.5 bits (63), Expect = 0.82
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 483 PPPPPXXXGXXPPXPP 530
           PPPPP   G  PP PP
Sbjct: 764 PPPPPGVAGAGPPPPP 779



 Score = 24.2 bits (50), Expect(2) = 1.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 790 GXXAXXXPPPPPPP 831
           G      PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPP 782



 Score = 23.0 bits (47), Expect(2) = 1.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 814 PPPPPPXXP 840
           PPPPPP  P
Sbjct: 775 PPPPPPPPP 783


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 1000 PPPPPPP 1020
            PPPPPPP
Sbjct: 191  PPPPPPP 197



 Score = 22.6 bits (46), Expect(2) = 1.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 1003 PPPPPPXXXXPR 1038
            PPPPPP    P+
Sbjct: 238  PPPPPPPTLPPQ 249


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 483 PPPPPXXXGXXPPXPPXXXXXXXPXPPXF 569
           PPPPP   G  PP  P       P PP +
Sbjct: 9   PPPPPPPPGFEPPSQP-----PPPPPPGY 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,931
Number of Sequences: 5004
Number of extensions: 34864
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)