Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N21
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098999-5|AAC68725.1|  102|Caenorhabditis elegans Hypothetical ...    33   0.36 
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    33   0.36 
Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    29   3.4  
AC084196-4|AAP40511.1|  162|Caenorhabditis elegans Hypothetical ...    29   3.4  
AC084196-3|AAK39621.1|  285|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z73978-1|CAA98294.1|  236|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AF098999-5|AAC68725.1|  102|Caenorhabditis elegans Hypothetical
           protein W04C9.2 protein.
          Length = 102

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +1

Query: 157 KFGVKSALLGSAVYYTIDKGVWK-DSATTAAIYDELEKGMSPYVGELKSQVPYELPALPS 333
           K G+K  L+  AV  +ID  +W  ++   + +Y +L+K + P       Q       LP+
Sbjct: 9   KLGIKVGLVAGAVKLSIDNDIWSTNNVKGSELYQKLKKYILPGTVVFPEQ-------LPT 61

Query: 334 NDRISYLFKYYWNCGVKATFRFLVELPTHTSNAA 435
            + +       WN  V + F  +  +P+  +  A
Sbjct: 62  VEDVQLKAGGKWNSAVDSVFTTIENVPSSVNTVA 95


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 326 YLLMTGYHICSSTTGIAVSKLHLDF*SNCLPILVMQLSRHTTL--FHHLWKLQNHIK 490
           YL+  GYH  + T GI VS     F S  L +LV Q  R  TL  F   WK++ +++
Sbjct: 270 YLVPMGYHNQAITNGIFVSVSMHGFLSTVLLLLVHQPYRMATLRIFKCRWKVKTNVR 326


>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 266 KECHHMSGN*RAKFHTNYQHYLLMTGYHI--CSSTTGIAVSKLHLDF*SN-CLP 418
           +EC  +SG    K+ TNY + LL+ G +   C  T    +S   L F S  C+P
Sbjct: 110 QECERISGKSETKYETNYCYVLLIPGKNSSHCHETKSGDLSPTTLFFRSAVCMP 163


>AC084196-4|AAP40511.1|  162|Caenorhabditis elegans Hypothetical
           protein Y55D5A.1b protein.
          Length = 162

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 202 TIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALP 330
           T+    W+   T   ++   ++ +  Y+  LKSQ P  +P  P
Sbjct: 52  TLQNATWQTMNTVLRVFSLTDRQVMGYLRHLKSQTPSAMPIFP 94


>AC084196-3|AAK39621.1|  285|Caenorhabditis elegans Hypothetical
           protein Y55D5A.1a protein.
          Length = 285

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 202 TIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALP 330
           T+    W+   T   ++   ++ +  Y+  LKSQ P  +P  P
Sbjct: 175 TLQNATWQTMNTVLRVFSLTDRQVMGYLRHLKSQTPSAMPIFP 217


>Z73978-1|CAA98294.1|  236|Caenorhabditis elegans Hypothetical
           protein ZC302.3 protein.
          Length = 236

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = +1

Query: 169 KSALLGSAVYYTIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALPSNDRIS 348
           KS L G     T++  V K+   T ++ D ++   + ++G+ +     EL  +P    I 
Sbjct: 71  KSMLDGLKSQCTVNTVVLKNMLITKSVEDSVKLNAARFLGKSEK----ELMDIPE---IK 123

Query: 349 YLFKYYWNC 375
            +F+ YWNC
Sbjct: 124 QMFQQYWNC 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,372
Number of Sequences: 27780
Number of extensions: 275195
Number of successful extensions: 634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)