Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_N19
(931 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 312 6e-86
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 164 2e-41
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 163 4e-41
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 161 1e-40
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 28 2.2
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.8
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.8
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 5.0
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 6.6
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 6.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 8.7
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 8.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 312 bits (765), Expect = 6e-86
Identities = 139/199 (69%), Positives = 162/199 (81%)
Frame = +2
Query: 125 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 304
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 305 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 484
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 485 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 664
R+E+E+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 665 EPYNATLSVHQLVENTDET 721
EPYNATLS+HQLVEN+DET
Sbjct: 181 EPYNATLSMHQLVENSDET 199
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 164 bits (398), Expect = 2e-41
Identities = 79/201 (39%), Positives = 115/201 (57%), Gaps = 2/201 (0%)
Frame = +2
Query: 125 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 298
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 299 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 478
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 479 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 658
+R+ +++C LQGF ++ EY + +SV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 659 VVEPYNATLSVHQLVENTDET 721
VVEPYN+ L+ H ++ D T
Sbjct: 181 VVEPYNSVLTTHATLDLADCT 201
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 163 bits (395), Expect = 4e-41
Identities = 78/205 (38%), Positives = 118/205 (57%), Gaps = 6/205 (2%)
Frame = +2
Query: 125 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 286
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 287 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 466
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 467 SVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 646
SVL+ +R+ +++C LQGF ++ EY + +SV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 647 VSDTVVEPYNATLSVHQLVENTDET 721
VS +VVEPYN+ L+ H ++N+D T
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCT 205
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 161 bits (392), Expect = 1e-40
Identities = 74/199 (37%), Positives = 122/199 (61%), Gaps = 3/199 (1%)
Frame = +2
Query: 128 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 307
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 308 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 481
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 482 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDT 658
+ +E++ D L+GF ++ + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 659 VVEPYNATLSVHQLVENTD 715
VV+PYN+ L++ +L N D
Sbjct: 182 VVQPYNSLLALKRLTLNAD 200
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.9 bits (59), Expect = 2.2
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +3
Query: 429 PRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPT 608
PR++T++ L S++ S S+ Q + +S L+ PS AP P + SSS T
Sbjct: 219 PRESTEKPLLSVSALSS-SSHLQPTSATSSSSRLY-PSRPAPTPPASSSSSPLLSSQTVK 276
Query: 609 ES*THTQ*SPRPKYQTLSSNHTMR 680
+ ++ P P + S+++ +R
Sbjct: 277 TTTSNASRQPSPLVSSKSTDNIIR 300
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 428 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 517
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 252 SWSASMYTTMKPPAASTCPAPFSSTWSPAPWTLSA 356
S +AS PP A+ + SST SPAPW A
Sbjct: 396 SGAASPQAGHPPPWAAASTSVSSSTSSPAPWAKPA 430
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 164 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 265
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 359 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 460
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 501 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 596
LA+ Y + + +V APG +W+P+ +R K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 108 KITYTK*GKSFIYRPANVV 164
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/65 (26%), Positives = 21/65 (32%)
Frame = -3
Query: 323 RREWRGARTCRRRLHCSIH*CAPTASQSPHGRHRWGRCRARQR*SPRT*LQSGYHIGRPV 144
R R C + L C H C + ++R QS H G P
Sbjct: 693 RENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPC 752
Query: 143 DERFP 129
DER P
Sbjct: 753 DERIP 757
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 222 PVPTMGTLT----CSWSASMYTTMKPPAASTCPAPFSSTWSPAP 341
P+PT + S S T P +A+T P P S+T P P
Sbjct: 544 PIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATTKPTP 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,646
Number of Sequences: 5004
Number of extensions: 63958
Number of successful extensions: 200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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